Whole genome resequencing of the human parasite Schistosoma mansoni reveals population history and effects of selection

Evolutionary insights into host–pathogen interactions from mammalian sequence data

(2015) Manuela Sironi et al.   NATURE REVIEWS GENETICS

A switch in time

(2015) Thomas Crellen et al.   NATURE REVIEWS MICROBIOLOGY

Mountain gorilla genomes reveal the impact of long-term population decline and inbreeding

(2015) Y. Xue et al.   SCIENCE

Paths to a malaria vaccine illuminated by parasite genomics

(2015) David J. Conway   TRENDS IN GENETICS

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

Human schistosomiasis

(2014) Daniel G Colley et al.   LANCET

Pre-Columbian mycobacterial genomes reveal seals as a source of New World human tuberculosis

(2014) Kirsten I. Bos et al.   NATURE

Inferring human population size and separation history from multiple genome sequences

(2014) Stephan Schiffels et al.   NATURE GENETICS

Natural selection and infectious disease in human populations

(2014) Elinor K. Karlsson et al.   NATURE REVIEWS GENETICS

Halting harmful helminths

(2014) K. F. Hoffmann et al.   SCIENCE

Genome sequencing of chimpanzee malaria parasites reveals possible pathways of adaptation to human hosts

(2014) Thomas D. Otto et al.   Nature Communications

Integrating sequence and array data to create an improved 1000 Genomes Project haplotype reference panel

(2014) Olivier Delaneau et al.   Nature Communications

The Global Burden of Disease Study 2010: Interpretation and Implications for the Neglected Tropical Diseases

(2014) Peter J. Hotez et al.   PLoS Neglected Tropical Diseases

The Branch-Site Test of Positive Selection Is Surprisingly Robust but Lacks Power under Synonymous Substitution Saturation and Variation in GC

(2013) Walid H. Gharib et al.   MOLECULAR BIOLOGY AND EVOLUTION

The genomes of four tapeworm species reveal adaptations to parasitism

(2013) Isheng J. Tsai et al.   NATURE

Large-scale gene function analysis with the PANTHER classification system

(2013) Huaiyu Mi et al.   Nature Protocols

Pfam: the protein families database

(2013) Robert D. Finn et al.   NUCLEIC ACIDS RESEARCH

Genetic and Molecular Basis of Drug Resistance and Species-Specific Drug Action in Schistosome Parasites

(2013) C. L. L. Valentim et al.   SCIENCE

Comparative Study of Transcriptome Profiles of Mechanical- and Skin-Transformed Schistosoma mansoni Schistosomula

(2013) Anna V. Protasio et al.   PLoS Neglected Tropical Diseases

DNA ‘barcoding’ of Schistosoma mansoni across sub-Saharan Africa supports substantial within locality diversity and geographical separation of genotypes

(2012) Bonnie L. Webster et al.   ACTA TROPICA

Population genetic structure of Schistosoma mansoni and Schistosoma haematobium from across six sub-Saharan African countries: Implications for epidemiology, evolution and control

(2012) Charlotte M. Gower et al.   ACTA TROPICA

Schistosomiasis collection at NHM (SCAN)

(2012) Aidan M Emery et al.   Parasites & Vectors

Schistosoma mansoni Venom Allergen Like Proteins Present Differential Allergic Responses in a Murine Model of Airway Inflammation

(2012) Leonardo Paiva Farias et al.   PLoS Neglected Tropical Diseases

A Systematically Improved High Quality Genome and Transcriptome of the Human Blood Fluke Schistosoma mansoni

(2012) Anna V. Protasio et al.   PLoS Neglected Tropical Diseases

The origin and antiquity of syphilis revisited: An Appraisal of Old World pre-Columbian evidence for treponemal infection

(2011) Kristin N. Harper et al.   AMERICAN JOURNAL OF PHYSICAL ANTHROPOLOGY

Guns, germs and dogs: On the origin of Leishmania chagasi

(2011) Raphaël Leblois et al.   INFECTION GENETICS AND EVOLUTION

Inference of human population history from individual whole-genome sequences

(2011) Heng Li et al.   NATURE

Whole-genome sequencing data offer insights into human demography

(2011) Jonathan K Pritchard   NATURE GENETICS

Bayesian inference of ancient human demography from individual genome sequences

(2011) Ilan Gronau et al.   NATURE GENETICS

A framework for variation discovery and genotyping using next-generation DNA sequencing data

(2011) Mark A DePristo et al.   NATURE GENETICS

Genetic Consequences of Mass Human Chemotherapy for Schistosoma mansoni: Population Structure Pre- and Post-Praziquantel Treatment in Tanzania

(2010) Alice J. Norton et al.   AMERICAN JOURNAL OF TROPICAL MEDICINE AND HYGIENE

The Evolution of Human Genetic and Phenotypic Variation in Africa

(2010) Michael C. Campbell et al.   CURRENT BIOLOGY

Evolution of the mutation rate

(2010) Michael Lynch   TRENDS IN GENETICS

Spontaneous Mutation Accumulation Studies in Evolutionary Genetics

(2009) Daniel L. Halligan et al.   Annual Review of Ecology Evolution and Systematics

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

The genome of the blood fluke Schistosoma mansoni

(2009) Matthew Berriman et al.   NATURE

Molecular epidemiology of Schistosoma mansoni in Uganda: DNA barcoding reveals substantial genetic diversity within Lake Albert and Lake Victoria populations

(2009) J. R. STOTHARD et al.   PARASITOLOGY

Introgressive hybridization of human and rodent schistosome parasites in western Kenya

(2008) MICHELLE L. STEINAUER et al.   MOLECULAR ECOLOGY

Northern Hemisphere Controls on Tropical Southeast African Climate During the Past 60,000 Years

(2008) J. E. Tierney et al.   SCIENCE