Microbial metabolic networks in a complex electrogenic biofilm recovered from a stimulus-induced metatranscriptomics approach

Microbial community structures differentiated in a single-chamber air-cathode microbial fuel cell fueled with rice straw hydrolysate

(2014) Zejie Wang et al.   Biotechnology for Biofuels

Metabolic interdependencies between phylogenetically novel fermenters and respiratory organisms in an unconfined aquifer

(2014) Kelly C Wrighton et al.   ISME Journal

QUAST: quality assessment tool for genome assemblies

(2013) Alexey Gurevich et al.   BIOINFORMATICS

Linking microbial community structure, interactions and function in anaerobic digesters using new molecular techniques

(2013) Inka Vanwonterghem et al.   CURRENT OPINION IN BIOTECHNOLOGY

Microbial population and functional dynamics associated with surface potential and carbon metabolism

(2013) Shun'ichi Ishii et al.   ISME Journal

Computational meta'omics for microbial community studies

(2013) N. Segata et al.   Molecular Systems Biology

Genome sequences of rare, uncultured bacteria obtained by differential coverage binning of multiple metagenomes

(2013) Mads Albertsen et al.   NATURE BIOTECHNOLOGY

Identifying the microbial communities and operational conditions for optimized wastewater treatment in microbial fuel cells

(2013) Shun'ichi Ishii et al.   WATER RESEARCH

A novel metatranscriptomic approach to identify gene expression dynamics during extracellular electron transfer

(2013) Shun’ichi Ishii et al.   Nature Communications

Complete genome sequence of Desulfocapsa sulfexigens, a marine deltaproteobacterium specialized in disproportionating inorganic sulfur compounds

(2013) Kai Waldemar Finster et al.   Standards in Genomic Sciences

Electromicrobiology

(2012) Derek R. Lovley   Annual Review of Microbiology

Systems biology approach to bioremediation

(2012) Romy Chakraborty et al.   CURRENT OPINION IN BIOTECHNOLOGY

Effect of Periodontal Pathogens on the Metatranscriptome of a Healthy Multispecies Biofilm Model

(2012) J. Frias-Lopez et al.   JOURNAL OF BACTERIOLOGY

Filamentous bacteria transport electrons over centimetre distances

(2012) Christian Pfeffer et al.   NATURE

Structure, function and diversity of the healthy human microbiome

(2012)   NATURE

Microbial interactions: from networks to models

(2012) Karoline Faust et al.   NATURE REVIEWS MICROBIOLOGY

Functionally Stable and Phylogenetically Diverse Microbial Enrichments from Microbial Fuel Cells during Wastewater Treatment

(2012) Shun'ichi Ishii et al.   PLoS One

Fermentation, Hydrogen, and Sulfur Metabolism in Multiple Uncultivated Bacterial Phyla

(2012) K. C. Wrighton et al.   SCIENCE

Sub-inhibitory concentrations of different pharmaceutical products affect the meta-transcriptome of river biofilm communities cultivated in rotating annular reactors

(2012) Etienne Yergeau et al.   Environmental Microbiology Reports

OptCom: A Multi-Level Optimization Framework for the Metabolic Modeling and Analysis of Microbial Communities

(2012) Ali R. Zomorrodi et al.   PLoS Computational Biology

The electric picnic: synergistic requirements for exoelectrogenic microbial communities

(2011) Patrick D Kiely et al.   CURRENT OPINION IN BIOTECHNOLOGY

Community transcriptomics reveals universal patterns of protein sequence conservation in natural microbial communities

(2011) Frank J Stewart et al.   GENOME BIOLOGY

Microbial Community Analysis of Anodes from Sediment Microbial Fuel Cells Powered by Rhizodeposits of Living Rice Plants

(2010) L. De Schamphelaire et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Evolution of electron transfer out of the cell: comparative genomics of six Geobacter genomes

(2010) Jessica E Butler et al.   BMC GENOMICS

Establishment and metabolic analysis of a model microbial community for understanding trophic and electron accepting interactions of subsurface anaerobic environments

(2010) Lance D Miller et al.   BMC MICROBIOLOGY

A global network of coexisting microbes from environmental and whole-genome sequence data

(2010) S. Chaffron et al.   GENOME RESEARCH

Integrated metatranscriptomic and metagenomic analyses of stratified microbial assemblages in the open ocean

(2010) Yanmei Shi et al.   ISME Journal

A Catalog of Reference Genomes from the Human Microbiome

(2010) et al.   SCIENCE

Development of a biomarker for Geobacter activity and strain composition; Proteogenomic analysis of the citrate synthase protein during bioremediation of U(VI)

(2010) Michael J. Wilkins et al.   Microbial Biotechnology

Comparative day/night metatranscriptomic analysis of microbial communities in the North Pacific subtropical gyre

(2009) Rachel S. Poretsky et al.   ENVIRONMENTAL MICROBIOLOGY

Microbial community structure and its functional implications

(2009) Jed A. Fuhrman   NATURE

Dethiobacter alkaliphilus gen. nov. sp. nov., and Desulfurivibrio alkaliphilus gen. nov. sp. nov.: two novel representatives of reductive sulfur cycle from soda lakes

(2008) D. Yu. Sorokin et al.   EXTREMOPHILES

Highly conserved genes in Geobacter species with expression patterns indicative of acetate limitation

(2008) C. Risso et al.   MICROBIOLOGY-SGM

Mapping and quantifying mammalian transcriptomes by RNA-Seq

(2008) Ali Mortazavi et al.   NATURE METHODS

Simultaneous Assessment of Soil Microbial Community Structure and Function through Analysis of the Meta-Transcriptome

(2008) Tim Urich et al.   PLoS One

Resistance, resilience, and redundancy in microbial communities

(2008) S. D. Allison et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Microbial community gene expression in ocean surface waters

(2008) J. Frias-Lopez et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Microbial Engines That Drive Earth's Biogeochemical Cycles

(2008) P. G. Falkowski et al.   SCIENCE