Design principles of stripe-forming motifs: the role of positive feedback

Spatiotemporal network motif reveals the biological traits of developmental gene regulatory networks in Drosophila melanogaster

(2012) Man-Sun Kim et al.   BMC Systems Biology

Evolvability of feed-forward loop architecture biases its abundance in transcription networks

(2012) Stefanie Widder et al.   BMC Systems Biology

Gene Regulatory Logic for Reading the Sonic Hedgehog Signaling Gradient in the Vertebrate Neural Tube

(2012) Nikolaos Balaskas et al.   CELL

Noise drives sharpening of gene expression boundaries in the zebrafish hindbrain

(2012) Lei Zhang et al.   Molecular Systems Biology

Mutual Repression Enhances the Steepness and Precision of Gene Expression Boundaries

(2012) Thomas R. Sokolowski et al.   PLoS Computational Biology

Morphogen Gradients: From Generation to Interpretation

(2011) Katherine W. Rogers et al.   Annual Review of Cell and Developmental Biology

Pattern, Growth, and Control

(2011) Arthur D. Lander   CELL

Spatiotemporal mechanisms of morphogen gradient interpretation

(2011) Marcos Nahmad et al.   CURRENT OPINION IN GENETICS & DEVELOPMENT

Structural Discrimination of Robustness in Transcriptional Feedforward Loops for Pattern Formation

(2011) Guillermo Rodrigo et al.   PLoS One

Synthetic Biology: Integrated Gene Circuits

(2011) N. Nandagopal et al.   SCIENCE

The Role of Incoherent MicroRNA-Mediated Feedforward Loops in Noise Buffering

(2011) Matteo Osella et al.   PLoS Computational Biology

Functional Motifs in Biochemical Reaction Networks

(2010) John J. Tyson et al.   Annual Review of Physical Chemistry

Dynamic network rewiring determines temporal regulatory functions in Drosophilamelanogaster development processes

(2010) Man-Sun Kim et al.   BIOESSAYS

Modeling bistable cell-fate choices in the Drosophila eye: qualitative and quantitative perspectives

(2010) T. G. W. Graham et al.   DEVELOPMENT

An atlas of gene regulatory networks reveals multiple three-gene mechanisms for interpreting morphogen gradients

(2010) James Cotterell et al.   Molecular Systems Biology

Emerging properties of animal gene regulatory networks

(2010) Eric H. Davidson   NATURE

An engineered mammalian band-pass network

(2010) D. Greber et al.   NUCLEIC ACIDS RESEARCH

Optimizing information flow in small genetic networks. II. Feed-forward interactions

(2010) Aleksandra M. Walczak et al.   PHYSICAL REVIEW E

Understanding gene circuits at cell-fate branch points for rational cell reprogramming

(2010) Joseph X. Zhou et al.   TRENDS IN GENETICS

Stripe formation in the early fly embryo: principles, models, and networks

(2009) Dmitri Papatsenko   BIOESSAYS

Hub genes with positive feedbacks function as master switches in developmental gene regulatory networks

(2009) Chang H. Seo et al.   BIOINFORMATICS

Specialized or flexible feed-forward loop motifs: a question of topology

(2009) Javier Macía et al.   BMC Systems Biology

Architecture-Dependent Noise Discriminates Functionally Analogous Differentiation Circuits

(2009) Tolga Çağatay et al.   CELL

The Incoherent Feedforward Loop Can Provide Fold-Change Detection in Gene Regulation

(2009) Lea Goentoro et al.   MOLECULAR CELL

The second wave of synthetic biology: from modules to systems

(2009) Priscilla E. M. Purnick et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Pattern formation by dynamically interacting network motifs

(2009) J. Lembong et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Understanding Modularity in Molecular Networks Requires Dynamics

(2009) R. P. Alexander et al.   Science Signaling

Graded Dorsal and Differential Gene Regulation in the Drosophila Embryo

(2009) G. T. Reeves et al.   Cold Spring Harbor Perspectives in Biology

Canalization of Gene Expression and Domain Shifts in the Drosophila Blastoderm by Dynamical Attractors

(2009) Manu et al.   PLoS Computational Biology

The biphasic behavior of incoherent feed-forward loops in biomolecular regulatory networks

(2008) Dongsan Kim et al.   BIOESSAYS

Positive feedback in cellular control systems

(2008) Alexander Y. Mitrophanov et al.   BIOESSAYS

Pattern formation in the vertebrate neural tube: a sonic hedgehog morphogen-regulated transcriptional network

(2008) E. Dessaud et al.   DEVELOPMENT

Mutual interaction in network motifs robustly sharpens gene expression in developmental processes

(2008) Shuji Ishihara et al.   JOURNAL OF THEORETICAL BIOLOGY

The incoherent feed-forward loop can generate non-monotonic input functions for genes

(2008) Shai Kaplan et al.   Molecular Systems Biology

Network Evolution of Body Plans

(2008) Koichi Fujimoto et al.   PLoS One