Deciphering Fur transcriptional regulatory network highlights its complex role beyond iron metabolism in Escherichia coli

The Iron Stimulon and Fur Regulon of Geobacter sulfurreducens and Their Role in Energy Metabolism

(2014) M. Embree et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Genome-scale reconstruction of the sigma factor network in Escherichia coli: topology and functional states

(2014) Byung-Kwan Cho et al.   BMC BIOLOGY

Global transcriptional response of Caulobacter crescentus to iron availability

(2013) José F da Silva Neto et al.   BMC GENOMICS

Identification and Characterization of Novel Helicobacter pylori apo-Fur-Regulated Target Genes

(2013) B. M. Carpenter et al.   JOURNAL OF BACTERIOLOGY

Genome-scale models of metabolism and gene expression extend and refine growth phenotype prediction

(2013) E. J. O{middle dot}Brien et al.   Molecular Systems Biology

Basic and applied uses of genome-scale metabolic network reconstructions of Escherichia coli

(2013) D. McCloskey et al.   Molecular Systems Biology

The Transcriptional Landscape of Campylobacter jejuni under Iron Replete and Iron Limited Growth Conditions

(2013) James Butcher et al.   PLoS One

Genome-wide identification of Bacillus subtilis CodY-binding sites at single-nucleotide resolution

(2013) B. R. Belitsky et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Bacterial Response Regulator ArcA Uses a Diverse Binding Site Architecture to Regulate Carbon Oxidation Globally

(2013) Dan M. Park et al.   PLoS Genetics

Genome-scale Analysis of Escherichia coli FNR Reveals Complex Features of Transcription Factor Binding

(2013) Kevin S. Myers et al.   PLoS Genetics

Fur-Mediated Activation of Gene Transcription in the Human Pathogen Neisseria gonorrhoeae

(2012) C. Yu et al.   JOURNAL OF BACTERIOLOGY

Expression of Multidrug Resistance Efflux Pump Gene norA Is Iron Responsive in Staphylococcus aureus

(2012) X. Deng et al.   JOURNAL OF BACTERIOLOGY

Inferring direct DNA binding from ChIP-seq

(2012) Timothy L. Bailey et al.   NUCLEIC ACIDS RESEARCH

RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more

(2012) Heladia Salgado et al.   NUCLEIC ACIDS RESEARCH

Structure and regulon of Campylobacter jejuni ferric uptake regulator Fur define apo-Fur regulation

(2012) J. Butcher et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The small RNA RybA regulates key-genes in the biosynthesis of aromatic amino acids under peroxide stress inE. coli

(2012) Kirstin Gerstle et al.   RNA Biology

Comparative Analysis of Regulatory Elements between Escherichia coli and Klebsiella pneumoniae by Genome-Wide Transcription Start Site Profiling

(2012) Donghyuk Kim et al.   PLoS Genetics

Comprehensive Genome-wide Protein-DNA Interactions Detected at Single-Nucleotide Resolution

(2011) Ho Sung Rhee et al.   CELL

The alternative aerobic ribonucleotide reductase of Escherichia coli, NrdEF, is a manganese-dependent enzyme that enables cell replication during periods of iron starvation

(2011) Julia E. Martin et al.   MOLECULAR MICROBIOLOGY

Mapping the regulon of Vibrio cholerae ferric uptake regulator expands its known network of gene regulation

(2011) B. W. Davies et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Staphylococcus aureus Fur Regulates the Expression of Virulence Factors That Contribute to the Pathogenesis of Pneumonia

(2010) V. J. Torres et al.   INFECTION AND IMMUNITY

Helicobacter pylori apo-Fur regulation appears unconserved across species

(2010) Shana Miles et al.   JOURNAL OF MICROBIOLOGY

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

(2010) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

Comprehensive comparative analysis of strand-specific RNA sequencing methods

(2010) Joshua Z Levin et al.   NATURE METHODS

EcoCyc: a comprehensive database of Escherichia coli biology

(2010) I. M. Keseler et al.   NUCLEIC ACIDS RESEARCH

Small RNA-induced differential degradation of the polycistronic mRNA iscRSUA

(2009) Guillaume Desnoyers et al.   EMBO JOURNAL

This Is Not Your Mother's Repressor: the Complex Role of Fur in Pathogenesis

(2009) B. M. Carpenter et al.   INFECTION AND IMMUNITY

Induction of the ferritin gene (ftnA) ofEscherichia coliby Fe2+-Fur is mediated by reversal of H-NS silencing and is RyhB independent

(2009) Anjali Nandal et al.   MOLECULAR MICROBIOLOGY

MEME SUITE: tools for motif discovery and searching

(2009) T. L. Bailey et al.   NUCLEIC ACIDS RESEARCH

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

The RAST Server: Rapid Annotations using Subsystems Technology

(2008) Ramy K Aziz et al.   BMC GENOMICS

Genome-wide analysis of Fis binding in Escherichia coli indicates a causative role for A-/AT-tracts

(2008) B.-K. Cho et al.   GENOME RESEARCH

Oxidant-Responsive Induction of the suf Operon, Encoding a Fe-S Assembly System, through Fur and IscR in Escherichia coli

(2008) K.-C. Lee et al.   JOURNAL OF BACTERIOLOGY

IscR Controls Iron-Dependent Biofilm Formation in Escherichia coli by Regulating Type I Fimbria Expression

(2008) Y. Wu et al.   JOURNAL OF BACTERIOLOGY

The Escherichia coli RutR transcription factor binds at targets within genes as well as intergenic regions

(2008) Tomohiro Shimada et al.   NUCLEIC ACIDS RESEARCH

Genome-scale reconstruction of the Lrp regulatory network in Escherichia coli

(2008) B.-K. Cho et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA