Transposon Insertion Sequencing Elucidates Novel Gene Involvement in Susceptibility and Resistance to Phages T4 and T7 in Escherichia coli O157

Phage therapy is highly effective against chronic lung infections with Pseudomonas aeruginosa

(2017) Elaine M Waters et al.   THORAX

The secondary resistome of multidrug-resistant Klebsiella pneumoniae

(2017) Bimal Jana et al.   Scientific Reports

The TraDIS toolkit: sequencing and analysis for dense transposon mutant libraries

(2016) Lars Barquist et al.   BIOINFORMATICS

A Novel Putrescine Exporter SapBCDF ofEscherichia coli

(2016) Yuta Sugiyama et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Quantitative Selection Analysis of Bacteriophage φCbK Susceptibility in Caulobacter crescentus

(2016) Matthias Christen et al.   JOURNAL OF MOLECULAR BIOLOGY

The design and analysis of transposon insertion sequencing experiments

(2016) Michael C. Chao et al.   NATURE REVIEWS MICROBIOLOGY

The EcoCyc database: reflecting new knowledge aboutEscherichia coliK-12

(2016) Ingrid M. Keseler et al.   NUCLEIC ACIDS RESEARCH

Bacteriophage Combinations Significantly Reduce Clostridium difficile GrowthIn Vitroand ProliferationIn Vivo

(2015) Janet Y. Nale et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Analysis of whole genome sequencing for the Escherichia coli O157:H7 typing phages

(2015) Lauren A Cowley et al.   BMC GENOMICS

The Pfam protein families database: towards a more sustainable future

(2015) Robert D. Finn et al.   NUCLEIC ACIDS RESEARCH

High-Throughput Analysis of Gene Essentiality and Sporulation in Clostridium difficile

(2015) Marcin Dembek et al.   mBio

Defects in polynucleotide phosphorylase impairs virulence in Escherichia coli O157:H7

(2015) Jia Hu et al.   Frontiers in Microbiology

Prokka: rapid prokaryotic genome annotation

(2014) T. Seemann   BIOINFORMATICS

Chromosomal DNA deletion confers phage resistance to Pseudomonas aeruginosa

(2014) Shuai Le et al.   Scientific Reports

Phage–host interplay: examples from tailed phages and Gram-negative bacterial pathogens

(2014) Soraya Chaturongakul et al.   Frontiers in Microbiology

A Genomewide Mutagenesis Screen Identifies Multiple Genes Contributing to Vi Capsular Expression in Salmonella enterica Serovar Typhi

(2013) D. Pickard et al.   JOURNAL OF BACTERIOLOGY

Revenge of the phages: defeating bacterial defences

(2013) Julie E. Samson et al.   NATURE REVIEWS MICROBIOLOGY

Approaches to querying bacterial genomes with transposon-insertion sequencing

(2013) Lars Barquist et al.   RNA Biology

Retrospective Application of Transposon-Directed Insertion Site Sequencing to a Library of Signature-Tagged Mini-Tn5Km2 Mutants of Escherichia coli O157:H7 Screened in Cattle

(2011) S. E. Eckert et al.   JOURNAL OF BACTERIOLOGY

Bacteriophage resistance mechanisms

(2010) Simon J. Labrie et al.   NATURE REVIEWS MICROBIOLOGY

Sequence analysis ofEscherichia coliO157:H7 bacteriophage ΦV10 and identification of a phage-encoded immunity protein that modifies the O157 antigen

(2009) Lynda L. Perry et al.   FEMS MICROBIOLOGY LETTERS

Simultaneous assay of every Salmonella Typhi gene using one million transposon mutants

(2009) G. C. Langridge et al.   GENOME RESEARCH