Incorporating Zebrafish Omics into Chemical Biology and Toxicology

NTP-CERHR expert panel report on the reproductive and developmental toxicity of bisphenol A

(2010) Robert E. Chapin et al.   BIRTH DEFECTS RESEARCH PART B-DEVELOPMENTAL AND REPRODUCTIVE TOXICOLOGY

A novel application of metabolomics in vertebrate development

(2009) Shunsuke Hayashi et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Identification of AML1-ETO modulators by chemical genomics

(2009) S. M. Corsello et al.   BLOOD

Parallel DNA pyrosequencing unveils new zebrafish microRNAs

(2009) Ana R Soares et al.   BMC GENOMICS

MicroRNAs: Target Recognition and Regulatory Functions

(2009) David P. Bartel   CELL

Proteomic studies in zebrafish liver cells exposed to the brominated flame retardants HBCD and TBBPA

(2009) Peter Kling et al.   ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY

Perturbation of Defense Pathways by Low-Dose Arsenic Exposure in Zebrafish Embryos

(2009) Carolyn J. Mattingly et al.   ENVIRONMENTAL HEALTH PERSPECTIVES

ALTERED GENE EXPRESSION IN THE BRAIN AND OVARIES OF ZEBRAFISH (DANIO RERIO) EXPOSED TO THE AROMATASE INHIBITOR FADROZOLE: MICROARRAY ANALYSIS AND HYPOTHESIS GENERATION

(2009) Daniel L. Villeneuve et al.   ENVIRONMENTAL TOXICOLOGY AND CHEMISTRY

MicroRNA identification in plasma and serum: a new tool to diagnose and monitor diseases

(2009) Maria Angelica Cortez et al.   EXPERT OPINION ON BIOLOGICAL THERAPY

Transcriptional Regulation in Liver and Testis Associated with Developmental and Reproductive Effects in Male Zebrafish Exposed to Natural Mixtures of Persistent Organic Pollutants (POP)

(2009) Rasoul Nourizadeh-Lillabadi et al.   JOURNAL OF TOXICOLOGY AND ENVIRONMENTAL HEALTH-PART A-CURRENT ISSUES

Genomic approaches to small molecule discovery

(2009) K Stegmaier   LEUKEMIA

RNA-Seq—quantitative measurement of expression through massively parallel RNA-sequencing

(2009) Brian T. Wilhelm et al.   METHODS

Deep sequencing of the zebrafish transcriptome response to mycobacterium infection

(2009) Zoltán Hegedűs et al.   MOLECULAR IMMUNOLOGY

Protein Profiles in Zebrafish (Danio rerio) Embryos Exposed to Perfluorooctane Sulfonate

(2009) Xiongjie Shi et al.   TOXICOLOGICAL SCIENCES

Zebrafish reward mutants reveal novel transcripts mediating the behavioral effects of amphetamine

(2009) Katharine J Webb et al.   GENOME BIOLOGY

Differential gene expression and biomarkers in zebrafish (Danio rerio) following exposure to produced water components

(2008) T.F. Holth et al.   AQUATIC TOXICOLOGY

High-throughput gene expression profiling of memory differentiation in primary human T cells

(2008) W. N. Haining et al.   BMC IMMUNOLOGY

Molecular targets of TBBPA in zebrafish analysed through integration of genomic and proteomic approaches

(2008) Marijke De Wit et al.   CHEMOSPHERE

Microarray Analysis Reveals a Mechanism of Phenolic Polybrominated Diphenylether Toxicity in Zebrafish

(2008) Antonius L. van Boxtel et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Transcriptional Biomarkers and Mechanisms of Copper-Induced Olfactory Injury in Zebrafish

(2008) Fred Tilton et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Biomarkers for exposure to estrogenic compounds: Gene expression analysis in zebrafish (Danio rerio)

(2008) Ulf Kausch et al.   ENVIRONMENTAL TOXICOLOGY

Potential of zebrafish for anticancer drug screening

(2008) Leonard I Zon et al.   Expert Opinion on Drug Discovery

Systems biology and functional genomics approaches for the identification of cellular responses to drug toxicity

(2008) Alison Hege Harrill et al.   Expert Opinion on Drug Metabolism & Toxicology

Variation of the genetic expression pattern after exposure to estradiol-17β and 4-nonylphenol in male zebrafish (Danio rerio)

(2008) B. Ruggeri et al.   GENERAL AND COMPARATIVE ENDOCRINOLOGY

Gene expression changes in a zebrafish model of drug dependency suggest conservation of neuro-adaptation pathways

(2008) L. J. M. Kily et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

A multi-analytical approach for metabolomic profiling of zebrafish (Danio rerio) livers

(2008) Eng Shi Ong et al.   Molecular BioSystems

RNA-Seq: a revolutionary tool for transcriptomics

(2008) Zhong Wang et al.   NATURE REVIEWS GENETICS

Expression-based screening identifies the combination of histone deacetylase inhibitors and retinoids for neuroblastoma differentiation

(2008) C. K. Hahn et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Use of toxicogenomics to understand mechanisms of drug-induced hepatotoxicity during drug discovery and development

(2008) Eric A.G. Blomme et al.   TOXICOLOGY LETTERS

Zebrafish Whole-Adult-Organism Chemogenomics for Large-Scale Predictive and Discovery Chemical Biology

(2008) Siew Hong Lam et al.   PLoS Genetics

Alterations in Micro-Ribonucleic Acid Expression Profiles Reveal a Novel Pathway for Estrogen Regulation

(2007) Amit Cohen et al.   ENDOCRINOLOGY