Archaea and the human gut: New beginning of an old story

Comparative genomics highlights the unique biology of Methanomassiliicoccales, a Thermoplasmatales-related seventh order of methanogenic archaea that encodes pyrrolysine

(2014) Guillaume Borrel et al.   BMC GENOMICS

Prognostic value of choline and betaine depends on intestinal microbiota-generated metabolite trimethylamine-N-oxide

(2014) Z. Wang et al.   EUROPEAN HEART JOURNAL

An improved method for specificity annotation shows a distinct evolutionary divergence among the microbial enzymes of the cholylglycine hydrolase family

(2014) P. Panigrahi et al.   MICROBIOLOGY-SGM

Increased Prevalence of Methanosphaera stadtmanae in Inflammatory Bowel Diseases

(2014) Pascale Blais Lecours et al.   PLoS One

Age dependent breath methane in the German population

(2014) Daniela Polag et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Unique Characteristics of the Pyrrolysine System in the 7th Order of Methanogens: Implications for the Evolution of a Genetic Code Expansion Cassette

(2014) Guillaume Borrel et al.   ARCHAEA-AN INTERNATIONAL MICROBIOLOGICAL JOURNAL

Reduction in prevalence ofArchaeaafter periodontal therapy in subjects with generalized aggressive periodontitis

(2013) EAG Lira et al.   AUSTRALIAN DENTAL JOURNAL

Ecology and characteristics of methanogenic archaea in animals and humans

(2013) Suwat Saengkerdsub et al.   CRITICAL REVIEWS IN MICROBIOLOGY

Breath methane positivity is more common and higher in patients with objectively proven delayed transit constipation

(2013) Kang-Moon Lee et al.   EUROPEAN JOURNAL OF GASTROENTEROLOGY & HEPATOLOGY

Phylogenomic Data Support a Seventh Order of Methylotrophic Methanogens and Provide Insights into the Evolution of Methanogenesis

(2013) Guillaume Borrel et al.   Genome Biology and Evolution

Prediction of enteric methane emissions from cattle

(2013) Luis E. Moraes et al.   GLOBAL CHANGE BIOLOGY

List of new names and new combinations previously effectively, but not validly, published

(2013) A. Oren et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Three-stage continuous culture system with a self-generated anaerobia to study the regionalized metabolism of the human gut microbiota

(2013) David Feria-Gervasio et al.   JOURNAL OF MICROBIOLOGICAL METHODS

Age, Dietary Fiber, Breath Methane, and Fecal Short Chain Fatty Acids Are Interrelated in Archaea-Positive Humans

(2013) Judlyn Fernandes et al.   JOURNAL OF NUTRITION

An archaeal origin of eukaryotes supports only two primary domains of life

(2013) Tom A. Williams et al.   NATURE

Intestinal microbiota metabolism of l-carnitine, a nutrient in red meat, promotes atherosclerosis

(2013) Robert A Koeth et al.   NATURE MEDICINE

Intestinal Microbial Metabolism of Phosphatidylcholine and Cardiovascular Risk

(2013) W.H. Wilson Tang et al.   NEW ENGLAND JOURNAL OF MEDICINE

Archaea and Fungi of the Human Gut Microbiome: Correlations with Diet and Bacterial Residents

(2013) Christian Hoffmann et al.   PLoS One

The Human Gut Chip “HuGChip”, an Explorative Phylogenetic Microarray for Determining Gut Microbiome Diversity at Family Level

(2013) William Tottey et al.   PLoS One

Metabolic niche of a prominent sulfate-reducing human gut bacterium

(2013) F. E. Rey et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Methylotrophic methanogenic Thermoplasmata implicated in reduced methane emissions from bovine rumen

(2013) Morten Poulsen et al.   Nature Communications

Human gut microbiota community structures in urban and rural populations in Russia

(2013) Alexander V. Tyakht et al.   Nature Communications

The Common Ancestor of Archaea and Eukarya Was Not an Archaeon

(2013) Patrick Forterre   ARCHAEA-AN INTERNATIONAL MICROBIOLOGICAL JOURNAL

McrA and 16S rRNA gene analysis suggests a novel lineage of Archaea phylogenetically affiliated with Thermoplasmatales in human subgingival plaque

(2012) Hans-Peter Horz et al.   ANAEROBE

Methanogenic archaea in subgingival sites: a review

(2012) Tung Nguyen-Hieu et al.   APMIS

Age-related prevalence of Methanomassiliicoccus luminyensis in the human gut microbiome

(2012) Bédis Dridi et al.   APMIS

Diversity, Physiology, and Niche Differentiation of Ammonia-Oxidizing Archaea

(2012) Roland Hatzenpichler   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

“Methanoplasmatales,” Thermoplasmatales-Related Archaea in Termite Guts and Other Environments, Are the Seventh Order of Methanogens

(2012) Kristina Paul et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Methane emissions from wetlands: biogeochemical, microbial, and modeling perspectives from local to global scales

(2012) Scott D. Bridgham et al.   GLOBAL CHANGE BIOLOGY

Methanomassiliicoccus luminyensis gen. nov., sp. nov., a methanogenic archaeon isolated from human faeces

(2012) B. Dridi et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Complete Genome Sequence of Methanomassiliicoccus luminyensis, the Largest Genome of a Human-Associated Archaea Species

(2012) A. Gorlas et al.   JOURNAL OF BACTERIOLOGY

Genome Sequence of "Candidatus Methanomethylophilus alvus" Mx1201, a Methanogenic Archaeon from the Human Gut Belonging to a Seventh Order of Methanogens

(2012) G. Borrel et al.   JOURNAL OF BACTERIOLOGY

A framework for human microbiome research

(2012)   NATURE

Gut microbiota composition correlates with diet and health in the elderly

(2012) Marcus J. Claesson et al.   NATURE

Human gut microbiome viewed across age and geography

(2012) Tanya Yatsunenko et al.   NATURE

Extensive inter-domain lateral gene transfer in the evolution of the human commensal Methanosphaera stadtmanae

(2012) Mor Nadia Lurie-Weinberger   Frontiers in Genetics

In vitro maintenance of a human proximal colon microbiota using the continuous fermentation system P-ECSIM

(2011) David Feria-Gervasio et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Phylogeny and evolution of the Archaea: one hundred genomes later

(2011) Celine Brochier-Armanet et al.   CURRENT OPINION IN MICROBIOLOGY

Contribution of lateral gene transfer to the gene repertoire of a gut-adapted methanogen

(2011) Mor N. Lurie-Weinberger et al.   GENOMICS

Obesity-associated gut microbiota is enriched in Lactobacillus reuteri and depleted in Bifidobacterium animalis and Methanobrevibacter smithii

(2011) M Million et al.   INTERNATIONAL JOURNAL OF OBESITY

Abundance and diversity of mucosa-associated hydrogenotrophic microbes in the healthy human colon

(2011) Gerardo M Nava et al.   ISME Journal

The antimicrobial resistance pattern of cultured human methanogens reflects the unique phylogenetic position of archaea

(2011) B. Dridi et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

Gut flora metabolism of phosphatidylcholine promotes cardiovascular disease

(2011) Zeneng Wang et al.   NATURE

Enterotypes of the human gut microbiome

(2011) Manimozhiyan Arumugam et al.   NATURE

Pan-genome of the dominant human gut-associated archaeon, Methanobrevibacter smithii, studied in twins

(2011) E. E. Hansen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

MethanogenicArchaeaand oral infections – ways to unravel the black box

(2011) Hans-Peter Horz et al.   Journal of Oral Microbiology

Fermentative metabolism by the human gut microbiota

(2010) A. Bernalier-Donadille   GASTROENTEROLOGIE CLINIQUE ET BIOLOGIQUE

Composition, variability, and temporal stability of the intestinal microbiota of the elderly

(2010) M. J. Claesson et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Mechanisms of Microbial Hydrogen Disposal in the Human Colon and Implications for Health and Disease

(2010) Noriko Nakamura et al.   Annual Review of Food Science and Technology

The Discussion Goes on: What Is the Role ofEuryarchaeotain Humans?

(2010) H.-P. Horz et al.   ARCHAEA-AN INTERNATIONAL MICROBIOLOGICAL JOURNAL

Biogas production: current state and perspectives

(2009) Peter Weiland   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Evaluating Breath Methane as a Diagnostic Test for Constipation-Predominant IBS

(2009) Laura Hwang et al.   DIGESTIVE DISEASES AND SCIENCES

Tools for stools: the challenge of assessing human intestinal microbiota using molecular diagnostics

(2009) Jean-François Brugère et al.   EXPERT REVIEW OF MOLECULAR DIAGNOSTICS

Monitoring Bacterial Community of Human Gut Microbiota Reveals an Increase in Lactobacillus in Obese Patients and Methanogens in Anorexic Patients

(2009) Fabrice Armougom et al.   PLoS One

High Prevalence of Methanobrevibacter smithii and Methanosphaera stadtmanae Detected in the Human Gut Using an Improved DNA Detection Protocol

(2009) Bédis Dridi et al.   PLoS One

Molecular evaluation of the human gut methanogenic archaeal microbiota reveals an age-associated increase of the diversity

(2009) Agnès Mihajlovski et al.   Environmental Microbiology Reports

Prevalence and molecular diversity ofArchaeain subgingival pockets of periodontitis patients

(2009) C. L. Li et al.   Oral microbiology and immunology

Metabolic, Phylogenetic, and Ecological Diversity of the Methanogenic Archaea

(2008) Yuchen Liu et al.   Annals of the New York Academy of Sciences

Structure of the Archaeal Community of the Rumen

(2008) P. H. Janssen et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Human methanogen diversity and incidence in healthy and diseased colonic groups using mcrA gene analysis

(2008) Pauline D Scanlan et al.   BMC MICROBIOLOGY

Mesophilic crenarchaeota: proposal for a third archaeal phylum, the Thaumarchaeota

(2008) Céline Brochier-Armanet et al.   NATURE REVIEWS MICROBIOLOGY

A moderately thermophilic ammonia-oxidizing crenarchaeote from a hot spring

(2008) R. Hatzenpichler et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Functional and comparative metagenomic analysis of bile salt hydrolase activity in the human gut microbiome

(2008) B. V. Jones et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A putative new order of methanogenic Archaea inhabiting the human gut, as revealed by molecular analyses of the mcrA gene

(2008) Agnès Mihajlovski et al.   RESEARCH IN MICROBIOLOGY