Unique Characteristics of the Pyrrolysine System in the 7th Order of Methanogens: Implications for the Evolution of a Genetic Code Expansion Cassette

Structure and Reaction Mechanism of Pyrrolysine Synthase (PylD)

(2013) Felix Quitterer et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

The path of lysine to pyrrolysine

(2013) Joseph A Krzycki   CURRENT OPINION IN CHEMICAL BIOLOGY

Deciphering post-translational modification codes

(2013) Adam P. Lothrop et al.   FEBS LETTERS

Phylogenomic Data Support a Seventh Order of Methylotrophic Methanogens and Provide Insights into the Evolution of Methanogenesis

(2013) Guillaume Borrel et al.   Genome Biology and Evolution

Candidatus Methanogranum caenicola: a Novel Methanogen from the Anaerobic Digested Sludge, and Proposal of Methanomassiliicoccaceae fam. nov. and Methanomassiliicoccales ord. nov., for a Methanogenic Lineage of the Class Thermoplasmata

(2013) Takao Iino et al.   MICROBES AND ENVIRONMENTS

“Methanoplasmatales,” Thermoplasmatales-Related Archaea in Termite Guts and Other Environments, Are the Seventh Order of Methanogens

(2012) Kristina Paul et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Methanomassiliicoccus luminyensis gen. nov., sp. nov., a methanogenic archaeon isolated from human faeces

(2012) B. Dridi et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Complete Genome Sequence of Methanomassiliicoccus luminyensis, the Largest Genome of a Human-Associated Archaea Species

(2012) A. Gorlas et al.   JOURNAL OF BACTERIOLOGY

Genome Sequence of "Candidatus Methanomethylophilus alvus" Mx1201, a Methanogenic Archaeon from the Human Gut Belonging to a Seventh Order of Methanogens

(2012) G. Borrel et al.   JOURNAL OF BACTERIOLOGY

PylSn and the Homologous N-terminal Domain of Pyrrolysyl-tRNA Synthetase Bind the tRNA That Is Essential for the Genetic Encoding of Pyrrolysine

(2012) Ruisheng Jiang et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Carbon source-dependent expansion of the genetic code in bacteria

(2012) L. Prat et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Functional context, biosynthesis, and genetic encoding of pyrrolysine

(2011) Marsha A Gaston et al.   CURRENT OPINION IN MICROBIOLOGY

The complete biosynthesis of the genetically encoded amino acid pyrrolysine from lysine

(2011) Marsha A. Gaston et al.   NATURE

RNAstructure: software for RNA secondary structure prediction and analysis

(2010) Jessica S Reuter et al.   BMC BIOINFORMATICS

BMGE (Block Mapping and Gathering with Entropy): a new software for selection of phylogenetic informative regions from multiple sequence alignments

(2010) Alexis Criscuolo et al.   BMC EVOLUTIONARY BIOLOGY

Dual functions of codons in the genetic code

(2010) Alexey V. Lobanov et al.   CRITICAL REVIEWS IN BIOCHEMISTRY AND MOLECULAR BIOLOGY

New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0

(2010) Stéphane Guindon et al.   SYSTEMATIC BIOLOGY

Selenocysteine, Pyrrolysine, and the Unique Energy Metabolism of Methanogenic Archaea

(2010) Michael Rother et al.   ARCHAEA-AN INTERNATIONAL MICROBIOLOGICAL JOURNAL

Selenoproteins in Archaea and Gram-positive bacteria

(2009) Tilmann Stock et al.   BIOCHIMICA ET BIOPHYSICA ACTA-GENERAL SUBJECTS

PhyloBayes 3: a Bayesian software package for phylogenetic reconstruction and molecular dating

(2009) Nicolas Lartillot et al.   BIOINFORMATICS

Distinct genetic code expansion strategies for selenocysteine and pyrrolysine are reflected in different aminoacyl-tRNA formation systems

(2009) Jing Yuan et al.   FEBS LETTERS

Pyrrolysyl-tRNA synthetase–tRNAPyl structure reveals the molecular basis of orthogonality

(2009) Kayo Nozawa et al.   NATURE

Horizontal gene transfer from extinct and extant lineages: biological innovation and the coral of life

(2009) G. P. Fournier et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Molecular evaluation of the human gut methanogenic archaeal microbiota reveals an age-associated increase of the diversity

(2009) Agnès Mihajlovski et al.   Environmental Microbiology Reports

Structure of Desulfitobacterium hafniense PylSc, a pyrrolysyl-tRNA synthetase

(2008) Marianne M. Lee et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

The RAST Server: Rapid Annotations using Subsystems Technology

(2008) Ramy K Aziz et al.   BMC GENOMICS

Crystallographic Studies on Multiple Conformational States of Active-site Loops in Pyrrolysyl-tRNA Synthetase

(2008) Tatsuo Yanagisawa et al.   JOURNAL OF MOLECULAR BIOLOGY

An Improved General Amino Acid Replacement Matrix

(2008) S. Q. Le et al.   MOLECULAR BIOLOGY AND EVOLUTION

The Vienna RNA Websuite

(2008) A. R. Gruber et al.   NUCLEIC ACIDS RESEARCH

R-Coffee: a method for multiple alignment of non-coding RNA

(2008) A. Wilm et al.   NUCLEIC ACIDS RESEARCH

A putative new order of methanogenic Archaea inhabiting the human gut, as revealed by molecular analyses of the mcrA gene

(2008) Agnès Mihajlovski et al.   RESEARCH IN MICROBIOLOGY