Genome-Wide Identification of Calcium Dependent Protein Kinase Gene Family in Plant Lineage Shows Presence of Novel D-x-D and D-E-L Motifs in EF-Hand Domain

Identification of new members of the MAPK gene family in plants shows diverse conserved domains and novel activation loop variants

(2015) Tapan Mohanta et al.   BMC GENOMICS

Genome-wide identification of Calcineurin B-Like (CBL) gene family of plants reveals novel conserved motifs and evolutionary aspects in calcium signaling events

(2015) Tapan Kumar Mohanta et al.   BMC PLANT BIOLOGY

Functional genomics and signaling events in mycorrhizal symbiosis

(2015) Tapan Kumar Mohanta et al.   Journal of Plant Interactions

In-silico identification and phylogenetic analysis of auxin efflux carrier gene family in Setaria italica L.

(2014) Kumar Mohanta Tapan et al.   AFRICAN JOURNAL OF BIOTECHNOLOGY

Conformational Changes in Calcium-Sensor Proteins under Molecular Crowding Conditions

(2014) Stefan Sulmann et al.   CHEMISTRY-A EUROPEAN JOURNAL

Daily Changes in Temperature, Not the Circadian Clock, Regulate Growth Rate in Brachypodium distachyon

(2014) Dominick A. Matos et al.   PLoS One

Genome-Wide Survey and Expression Analysis of Calcium-Dependent Protein Kinase in Gossypium raimondii

(2014) Wei Liu et al.   PLoS One

Salt stress-induced Ca2+ waves are associated with rapid, long-distance root-to-shoot signaling in plants

(2014) W.-G. Choi et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Jasmonates: biosynthesis, perception, signal transduction and action in plant stress response, growth and development. An update to the 2007 review in Annals of Botany

(2013) C. Wasternack et al.   ANNALS OF BOTANY

Differential expression of CPKs and cytosolic Ca2+ variation in resistant and susceptible apple cultivars (Malus x domestica) in response to the pathogen Erwinia amylovora and mechanical wounding

(2013) Chidananda Nagamangala Kanchiswamy et al.   BMC GENOMICS

Genome-wide identification and expression analysis of calcium-dependent protein kinase in maize

(2013) Xiangpei Kong et al.   BMC GENOMICS

MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0

(2013) Koichiro Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

The Norway spruce genome sequence and conifer genome evolution

(2013) Björn Nystedt et al.   NATURE

C3photosynthesis in the desert plantRhazya strictais fully functional at high temperatures and light intensities

(2013) Tracy Lawson et al.   NEW PHYTOLOGIST

Calcium-Dependent Protein Kinases in Plants: Evolution, Expression and Function

(2013) Gardette R. Valmonte et al.   PLANT AND CELL PHYSIOLOGY

Calcium-Dependent Protein Kinases: Hubs in Plant Stress Signaling and Development

(2013) P. Schulz et al.   PLANT PHYSIOLOGY

Following Gene Duplication, Paralog Interference Constrains Transcriptional Circuit Evolution

(2013) Christopher R. Baker et al.   SCIENCE

Ancient signals: comparative genomics of green plant CDPKs

(2013) Louis-Philippe Hamel et al.   TRENDS IN PLANT SCIENCE

Duplicated zebrafish co-orthologs of parathyroid hormone-related peptide (PTHrP, Pthlh) play different roles in craniofacial skeletogenesis

(2012) Yi-Lin Yan et al.   JOURNAL OF ENDOCRINOLOGY

Genome-wide identification, classification, and expression analysis of CDPK and its closely related gene families in poplar (Populus trichocarpa)

(2012) Ran Zuo et al.   MOLECULAR BIOLOGY REPORTS

Towards decoding the conifer giga-genome

(2012) John Mackay et al.   PLANT MOLECULAR BIOLOGY

Ginkgo biloba Responds to Herbivory by Activating Early Signaling and Direct Defenses

(2012) Tapan Kumar Mohanta et al.   PLoS One

CDPKs in immune and stress signaling

(2012) Marie Boudsocq et al.   TRENDS IN PLANT SCIENCE

Protein kinase signaling networks in plant innate immunity

(2011) Guillaume Tena et al.   CURRENT OPINION IN PLANT BIOLOGY

Materials for Sustained and Controlled Release of Nutrients and Molecules To Support Plant Growth

(2011) Drew Davidson et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

Signal transduction during cold, salt, and drought stresses in plants

(2011) Guo-Tao Huang et al.   MOLECULAR BIOLOGY REPORTS

Phytozome: a comparative platform for green plant genomics

(2011) David M. Goodstein et al.   NUCLEIC ACIDS RESEARCH

Efficient large-scale protein sequence comparison and gene matching to identify orthologs and co-orthologs

(2011) Khalid Mahmood et al.   NUCLEIC ACIDS RESEARCH

The Arabidopsis Information Resource (TAIR): improved gene annotation and new tools

(2011) Philippe Lamesch et al.   NUCLEIC ACIDS RESEARCH

A Novel Calcium Binding Site in the Slow Vacuolar Cation Channel TPC1 Senses Luminal Calcium Levels

(2011) B. Dadacz-Narloch et al.   PLANT CELL

Brassinosteroid Signal Transduction: From Receptor Kinase Activation to Transcriptional Networks Regulating Plant Development

(2011) Steven D. Clouse   PLANT CELL

Coping with Stresses: Roles of Calcium- and Calcium/Calmodulin-Regulated Gene Expression

(2011) Anireddy S.N. Reddy et al.   PLANT CELL

The Selaginella Genome Identifies Genetic Changes Associated with the Evolution of Vascular Plants

(2011) J. A. Banks et al.   SCIENCE

A framework integrating plant growth with hormones and nutrients

(2011) Gabriel Krouk et al.   TRENDS IN PLANT SCIENCE

Calcium-Dependent Protein Kinases from Arabidopsis Show Substrate Specificity Differences in an Analysis of 103 Substrates

(2011) Amy Curran et al.   Frontiers in Plant Science

The Language of Calcium Signaling

(2010) Antony N. Dodd et al.   Annual Review of Plant Biology

Relationship, evolutionary fate and function of two maize co-orthologs of rice GW2 associated with kernel size and weight

(2010) Qing Li et al.   BMC PLANT BIOLOGY

Alteration of Substrate Specificity: The Variable N-Terminal Domain of Tobacco Ca2+-Dependent Protein Kinase Is Important for Substrate Recognition

(2010) T. Ito et al.   PLANT CELL

AtCPK6, a functionally redundant and positive regulator involved in salt/drought stress tolerance in Arabidopsis

(2010) Jing Xu et al.   PLANTA

Evolution of Genome Size and Complexity in Pinus

(2009) Alison M. Morse et al.   PLoS One

Genome-Based Analysis of Chlamydomonas reinhardtii Exoribonucleases and Poly(A) Polymerases Predicts Unexpected Organellar and Exosomal Features

(2008) S. L. Zimmer et al.   GENETICS

Gene Family Evolution by Duplication, Speciation, and Loss

(2008) Cedric Chauve et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Analyzing real-time PCR data by the comparative CT method

(2008) Thomas D Schmittgen et al.   Nature Protocols

Gene expression module-based chemical function similarity search

(2008) Y. Li et al.   NUCLEIC ACIDS RESEARCH

CSS-Palm 2.0: an updated software for palmitoylation sites prediction

(2008) J. Ren et al.   PROTEIN ENGINEERING DESIGN & SELECTION

The CBL–CIPK network in plant calcium signaling

(2008) Sheng Luan   TRENDS IN PLANT SCIENCE