Genome-Wide Transcriptional Profiling and Metabolic Analysis Uncover Multiple Molecular Responses of the Grass Species Lolium perenne Under Low-Intensity Xenobiotic Stress

Comparative transcriptome analysis reveals carbohydrate and lipid metabolism blocks in Brassica napus L. male sterility induced by the chemical hybridization agent monosulfuron ester sodium

(2015) Zhanjie Li et al.   BMC GENOMICS

Protein kinase GCN2 mediates responses to glyphosate in Arabidopsis

(2015) Isabel Faus et al.   BMC PLANT BIOLOGY

Glyphosate Loss by Runoff and Its Relationship with Phosphorus Fertilization

(2015) María Carolina Sasal et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

EPSPS Gene Amplification in Glyphosate-Resistant Italian Ryegrass (Lolium perenne ssp. multiflorum) Populations from Arkansas (United States)

(2015) Reiofeli A. Salas et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

Metabolic profiling of Lolium perenne shows functional integration of metabolic responses to diverse subtoxic conditions of chemical stress

(2015) Anne-Antonella Serra et al.   JOURNAL OF EXPERIMENTAL BOTANY

RNA-Seq analysis of rye-grass transcriptomic response to an herbicide inhibiting acetolactate-synthase identifies transcripts linked to non-target-site-based resistance

(2015) Arnaud Duhoux et al.   PLANT MOLECULAR BIOLOGY

Genome-wide analysis of SnRK gene family in Brachypodium distachyon and functional characterization of BdSnRK2.9

(2015) Lianzhe Wang et al.   PLANT SCIENCE

ATP-sulfurylase, sulfur-compounds, and plant stress tolerance

(2015) Naser A. Anjum et al.   Frontiers in Plant Science

Transcriptional response of soybean to thiamethoxam seed treatment in the presence and absence of drought stress

(2014) Mitchell D Stamm et al.   BMC GENOMICS

Sub-lethal glyphosate exposure alters flowering phenology and causes transient male-sterility in Brassica spp

(2014) Jason Londo et al.   BMC PLANT BIOLOGY

PGR5 and NDH Pathways in Photosynthetic Cyclic Electron Transfer Respond Differently to Sublethal Treatment with Photosystem-Interfering Herbicides

(2014) Haifeng Qian et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

Alteration of plant physiology by glyphosate and its by-product aminomethylphosphonic acid: an overview

(2014) Marcelo P. Gomes et al.   JOURNAL OF EXPERIMENTAL BOTANY

Herbicides and plant hormesis

(2014) Regina G Belz et al.   PEST MANAGEMENT SCIENCE

GluTR2 Complements a hema1 Mutant Lacking Glutamyl-tRNA Reductase 1, but is Differently Regulated at the Post-Translational Level

(2014) Janina Apitz et al.   PLANT AND CELL PHYSIOLOGY

Arabidopsis CPL4 is an essential C-terminal domain phosphatase that suppresses xenobiotic stress responses

(2014) Akihito Fukudome et al.   PLANT JOURNAL

Mutation of the Inducible ARABIDOPSIS THALIANA CYTOCHROME P450 REDUCTASE2 Alters Lignin Composition and Improves Saccharification

(2014) L. Sundin et al.   PLANT PHYSIOLOGY

Quantifying Synergy: A Systematic Review of Mixture Toxicity Studies within Environmental Toxicology

(2014) Nina Cedergreen   PLoS One

De Novo Assembly of the Perennial Ryegrass Transcriptome Using an RNA-Seq Strategy

(2014) Jacqueline D. Farrell et al.   PLoS One

Comparative assessment of herbicide and fungicide runoff risk: A case study for peanut production in the Southern Atlantic Coastal Plain (USA)

(2014) Thomas L. Potter et al.   SCIENCE OF THE TOTAL ENVIRONMENT

De Novo Assembly and Annotation of the Transcriptome of the Agricultural Weed Ipomoea purpurea Uncovers Gene Expression Changes Associated with Herbicide Resistance

(2014) Trent Leslie et al.   G3-Genes Genomes Genetics

The role of ABA and MAPK signaling pathways in plant abiotic stress responses

(2013) Agyemang Danquah et al.   BIOTECHNOLOGY ADVANCES

The genome and transcriptome of perennial ryegrass mitochondria

(2013) Md Islam et al.   BMC GENOMICS

Low environmentally relevant levels of bioactive xenobiotics and associated degradation products cause cryptic perturbations of metabolism and molecular stress responses in Arabidopsis thaliana

(2013) Anne-Antonella Serra et al.   JOURNAL OF EXPERIMENTAL BOTANY

Count-based differential expression analysis of RNA sequencing data using R and Bioconductor

(2013) Simon Anders et al.   Nature Protocols

De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis

(2013) Brian J Haas et al.   Nature Protocols

Evidence for adaptive evolution of low-temperature stress response genes in a Pooideae grass ancestor

(2013) Magnus D. Vigeland et al.   NEW PHYTOLOGIST

Characterization of multiple-herbicide-resistant Italian ryegrass (Lolium perennespp.multiflorum)

(2013) Mingyang Liu et al.   PEST MANAGEMENT SCIENCE

Physiology and toxicology of hormone-disrupting chemicals in higher plants

(2013) Ivan Couée et al.   PLANT CELL REPORTS

The CBL–CIPK network mediates different signaling pathways in plants

(2013) Qinyang Yu et al.   PLANT CELL REPORTS

The roles of two transcription factors, ABI4 and CBFA, in ABA and plastid signalling and stress responses

(2013) Zhong-Wei Zhang et al.   PLANT MOLECULAR BIOLOGY

Reference Genes to Study Herbicide Stress Response in Lolium sp.: Up-Regulation of P450 Genes in Plants Resistant to Acetolactate-Synthase Inhibitors

(2013) Arnaud Duhoux et al.   PLoS One

Wildlife Ecotoxicology of Pesticides: Can We Track Effects to the Population Level and Beyond?

(2013) H.-R. Kohler et al.   SCIENCE

Strategies for transcriptome analysis in nonmodel plants

(2012) Judson A. Ward et al.   AMERICAN JOURNAL OF BOTANY

De novo characterization of the Chinese fir (Cunninghamia lanceolata) transcriptome and analysis of candidate genes involved in cellulose and lignin biosynthesis

(2012) Hua-Hong Huang et al.   BMC GENOMICS

Phytoremediation of Pyrene Contaminated Soils by Different Plant Species

(2012) Valeria D'Orazio et al.   CLEAN-Soil Air Water

The effects of glyphosate and aminopyralid on a multi-species plant field trial

(2012) Thomas Pfleeger et al.   ECOTOXICOLOGY

Xenobiotic sensing and signalling in higher plants

(2012) Fanny Ramel et al.   JOURNAL OF EXPERIMENTAL BOTANY

Cloning, identification and expression analysis of ACC oxidase gene involved in ethylene production pathway

(2012) Zohreh Jafari et al.   MOLECULAR BIOLOGY REPORTS

AMPK: a nutrient and energy sensor that maintains energy homeostasis

(2012) D. Grahame Hardie et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Unravelling the genetic bases of non-target-site-based resistance (NTSR) to herbicides: a major challenge for weed science in the forthcoming decade

(2012) Christophe Délye   PEST MANAGEMENT SCIENCE

Pivotal role of the AREB/ABF-SnRK2 pathway in ABRE-mediated transcription in response to osmotic stress in plants

(2012) Yasunari Fujita et al.   PHYSIOLOGIA PLANTARUM

Enhanced rates of herbicide metabolism in low herbicide-dose selected resistantLolium rigidum

(2012) Q. YU et al.   PLANT CELL AND ENVIRONMENT

A Protein Kinase, Calcineurin B-Like Protein-Interacting Protein Kinase9, Interacts with Calcium Sensor Calcineurin B-Like Protein3 and Regulates Potassium Homeostasis under Low-Potassium Stress in Arabidopsis

(2012) L.-L. Liu et al.   PLANT PHYSIOLOGY

Differential regulation of two sucrose transporters by defoliation and light conditions in perennial ryegrass

(2012) Pierre-Maxime Furet et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Inhibition of SnRK1 by metabolites: Tissue-dependent effects and cooperative inhibition by glucose 1-phosphate in combination with trehalose 6-phosphate

(2012) Cátia Nunes et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Evaluating de Bruijn Graph Assemblers on 454 Transcriptomic Data

(2012) Xianwen Ren et al.   PLoS One

Long-term impact of sublethal atrazine perturbs the redox homeostasis in pea (Pisum sativum L.) plants

(2012) Sergei Ivanov et al.   PROTOPLASMA

Toxic effects of pesticide mixtures at a molecular level: Their relevance to human health

(2012) Antonio F. Hernández et al.   TOXICOLOGY

Glyphosate in northern ecosystems

(2012) Marjo Helander et al.   TRENDS IN PLANT SCIENCE

New challenges in environmental analytical chemistry: Identification of toxic compounds in complex mixtures

(2011) Marie-Hélène Dévier et al.   COMPTES RENDUS CHIMIE

FLU, a negative feedback regulator of tetrapyrrole biosynthesis, is physically linked to the final steps of the Mg++-branch of this pathway

(2011) Dominika Kauss et al.   FEBS LETTERS

Evidence that abscisic acid promotes degradation of SNF1-related protein kinase (SnRK) 1 in wheat and activation of a putative calcium-dependent SnRK2

(2011) P. Coello et al.   JOURNAL OF EXPERIMENTAL BOTANY

Endocrine Disrupters: A Review of Some Sources, Effects, and Mechanisms of Actions on Behaviour and Neuroendocrine Systems

(2011) C. Frye et al.   JOURNAL OF NEUROENDOCRINOLOGY

Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega

(2011) F. Sievers et al.   Molecular Systems Biology

Heterodimers of theArabidopsisTranscription Factors bZIP1 and bZIP53 Reprogram Amino Acid Metabolism during Low Energy Stress

(2011) Katrin Dietrich et al.   PLANT CELL

Mg-protoporphyrin, haem and sugar signals double cellular total RNA against herbicide and high-light-derived oxidative stress

(2011) ZHONG-WEI ZHANG et al.   PLANT CELL AND ENVIRONMENT

Myo-inositol and beyond – Emerging networks under stress

(2011) Ravi Valluru et al.   PLANT SCIENCE

Toxicity Ranking and Toxic Mode of Action Evaluation of Commonly Used Agricultural Adjuvants on the Basis of Bacterial Gene Expression Profiles

(2011) Ingrid Nobels et al.   PLoS One

Aldehyde Dehydrogenases in Arabidopsis thaliana: Biochemical Requirements, Metabolic Pathways, and Functional Analysis

(2011) Naim Stiti et al.   Frontiers in Plant Science

Transcriptional responses to polycyclic aromatic hydrocarbon-induced stress in Arabidopsis thaliana reveal the involvement of hormone and defense signaling pathways

(2010) David Weisman et al.   BMC PLANT BIOLOGY

Ecological processes in a hormetic framework

(2010) David Costantini et al.   ECOLOGY LETTERS

The sucrose non-fermenting-1-related (SnRK) family of protein kinases: potential for manipulation to improve stress tolerance and increase yield

(2010) P. Coello et al.   JOURNAL OF EXPERIMENTAL BOTANY

What is stress? Concepts, definitions and applications in seed science

(2010) Ilse Kranner et al.   NEW PHYTOLOGIST

Auxin Biosynthesis Inhibitors, Identified by a Genomics-Based Approach, Provide Insights into Auxin Biosynthesis

(2010) Kazuo Soeno et al.   PLANT AND CELL PHYSIOLOGY

Calcium Signals: The Lead Currency of Plant Information Processing

(2010) J. Kudla et al.   PLANT CELL

Isolation and characterization of a rice glutathione S-transferase gene promoter regulated by herbicides and hormones

(2010) Tingzhang Hu et al.   PLANT CELL REPORTS

Functional Analysis of the Arabidopsis PAL Gene Family in Plant Growth, Development, and Response to Environmental Stress

(2010) J. Huang et al.   PLANT PHYSIOLOGY

Nucleotide diversity and linkage disequilibrium of nine genes with putative effects on flowering time in perennial ryegrass (Lolium perenne L.)

(2010) Alice Fiil et al.   PLANT SCIENCE

Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences

(2010) Jeremy Goecks et al.   GENOME BIOLOGY

Snf1-related protein kinases (SnRKs) act within an intricate network that links metabolic and stress signalling in plants

(2009) Nigel G. Halford et al.   BIOCHEMICAL JOURNAL

Differential patterns of reactive oxygen species and antioxidative mechanisms during atrazine injury and sucrose-induced tolerance in Arabidopsis thaliana plantlets

(2009) Fanny Ramel et al.   BMC PLANT BIOLOGY

Lemna minor L. as a model organism for ecotoxicological studies performing 1H NMR fingerprinting

(2009) Konstantinos A. Aliferis et al.   CHEMOSPHERE

Complete Chloroplast Genome Sequence of a Major Allogamous Forage Species, Perennial Ryegrass (Lolium perenne L.)

(2009) K. Diekmann et al.   DNA RESEARCH

In-depth analysis of the distinctive effects of norflurazon implies that tetrapyrrole biosynthesis, organellar gene expression and ABA cooperate in the GUN-type of plastid signalling

(2009) Christian Voigt et al.   PHYSIOLOGIA PLANTARUM

A composite transcriptional signature differentiates responses towards closely related herbicides in Arabidopsis thaliana and Brassica napus

(2009) Malay Das et al.   PLANT MOLECULAR BIOLOGY

Seasonal and annual variations of metal uptake, bioaccumulation, and toxicity in Trifolium repens and Lolium perenne growing in a heavy metal-contaminated field

(2008) Géraldine Bidar et al.   ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH

Glyphosate applied at low doses can stimulate plant growth

(2008) Edivaldo D Velini et al.   PEST MANAGEMENT SCIENCE

Glyphosate: a once-in-a-century herbicide

(2008) Stephen O Duke et al.   PEST MANAGEMENT SCIENCE

Generation of Hydrogen Peroxide in Chloroplasts of Arabidopsis Overexpressing Glycolate Oxidase as an Inducible System to Study Oxidative Stress

(2008) H. Fahnenstich et al.   PLANT PHYSIOLOGY

Tetrapyrrole profiling in Arabidopsis seedlings reveals that retrograde plastid nuclear signaling is not due to Mg-protoporphyrin IX accumulation

(2008) M. Moulin et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The steady-state level of Mg-protoporphyrin IX is not a determinant of plastid-to-nucleus signaling in Arabidopsis

(2008) N. Mochizuki et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Convergent energy and stress signaling

(2008) Elena Baena-González et al.   TRENDS IN PLANT SCIENCE

A comparison of soil organic carbon stocks between residential turf grass and native soil

(2008) Richard V. Pouyat et al.   URBAN ECOSYSTEMS

The mobility and degradation of pesticides in soils and the pollution of groundwater resources

(2007) Manuel Arias-Estévez et al.   AGRICULTURE ECOSYSTEMS & ENVIRONMENT