De novo assembly and transcriptome analysis of two contrary tillering mutants to learn the mechanisms of tillers outgrowth in switchgrass (Panicum virgatum L.)

Functions for rice RFL in vegetative axillary meristem specification and outgrowth

(2015) Gauravi M. Deshpande et al.   JOURNAL OF EXPERIMENTAL BOTANY

MONOCULM 3, an Ortholog of WUSCHEL in Rice, Is Required for Tiller Bud Formation

(2015) Zefu Lu et al.   Journal of Genetics and Genomics

Axillary Meristem Formation in Rice Requires theWUSCHELOrthologTILLERS ABSENT1

(2015) Wakana Tanaka et al.   PLANT CELL

Alteration of osa-miR156e expression affects rice plant architecture and strigolactones (SLs) pathway

(2015) Zhihui Chen et al.   PLANT CELL REPORTS

DWARF3 Participates in an SCF Complex and Associates with DWARF14 to Suppress Rice Shoot Branching

(2014) Jinfeng Zhao et al.   PLANT AND CELL PHYSIOLOGY

Identification and overexpression of gibberellin 2-oxidase (GA2ox ) in switchgrass (Panicum virgatum L.) for improved plant architecture and reduced biomass recalcitrance

(2014) Wegi A. Wuddineh et al.   PLANT BIOTECHNOLOGY JOURNAL

Global transcriptome analysis of Clostridium thermocellum ATCC 27405 during growth on dilute acid pretreated Populus and switchgrass

(2013) Charlotte M Wilson et al.   Biotechnology for Biofuels

High-throughput deep sequencing shows that microRNAs play important roles in switchgrass responses to drought and salinity stress

(2013) Fuliang Xie et al.   PLANT BIOTECHNOLOGY JOURNAL

Transcriptome Analysis of Nodes and Buds from High and Low Tillering Switchgrass Inbred Lines

(2013) Yixing Wang et al.   PLoS One

The interaction between OsMADS57 and OsTB1 modulates rice tillering via DWARF14

(2013) Siyi Guo et al.   Nature Communications

Sequencing and de novo analysis of the Chinese Sika deer antler-tip transcriptome during the ossification stage using Illumina RNA-Seq technology

(2012) Baojin Yao et al.   BIOTECHNOLOGY LETTERS

Efficient assembly and annotation of the transcriptome of catfish by RNA-Seq analysis of a doubled haploid homozygote

(2012) Shikai Liu et al.   BMC GENOMICS

Overexpression of miR156 in switchgrass (Panicum virgatum L.) results in various morphological alterations and leads to improved biomass production

(2012) Chunxiang Fu et al.   PLANT BIOTECHNOLOGY JOURNAL

The Arabidopsis Ortholog of Rice DWARF27 Acts Upstream of MAX1 in the Control of Plant Development by Strigolactones

(2012) M. T. Waters et al.   PLANT PHYSIOLOGY

Exploring the Switchgrass Transcriptome Using Second-Generation Sequencing Technology

(2012) Yixing Wang et al.   PLoS One

Transcriptome Sequencing and De Novo Analysis for Ma Bamboo (Dendrocalamus latiflorus Munro) Using the Illumina Platform

(2012) Mingying Liu et al.   PLoS One

Rice APC/CTE controls tillering by mediating the degradation of MONOCULM 1

(2012) Qibing Lin et al.   Nature Communications

Degradation of MONOCULM 1 by APC/CTAD1 regulates rice tillering

(2012) Cao Xu et al.   Nature Communications

New genomic resources for switchgrass: a BAC library and comparative analysis of homoeologous genomic regions harboring bioenergy traits

(2011) Christopher A Saski et al.   BMC GENOMICS

Transcriptome sequencing of lentil based on second-generation technology permits large-scale unigene assembly and SSR marker discovery

(2011) Sukhjiwan Kaur et al.   BMC GENOMICS

Characterization of the sesame (Sesamum indicum L.) global transcriptome using Illumina paired-end sequencing and development of EST-SSR markers

(2011) Wenliang Wei et al.   BMC GENOMICS

RNA-Seq analysis in mutant zebrafish reveals role of U1C protein in alternative splicing regulation

(2011) Tanja Dorothe Rösel et al.   EMBO JOURNAL

Genomic diversity in switchgrass (Panicum virgatum): from the continental scale to a dune landscape

(2011) GEOFFREY P. MORRIS et al.   MOLECULAR ECOLOGY

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

RNA-Seq analysis of splicing in Plasmodium falciparum uncovers new splice junctions, alternative splicing and splicing of antisense transcripts

(2011) K. Sorber et al.   NUCLEIC ACIDS RESEARCH

Transcriptome Sequencing and De Novo Analysis for Yesso Scallop (Patinopecten yessoensis) Using 454 GS FLX

(2011) Rui Hou et al.   PLoS One

Population-level transcriptome sequencing of nonmodel organisms Erynnis propertius and Papilio zelicaon

(2010) Shawn T O'Neil et al.   BMC GENOMICS

De novo sequencing and analysis of the American ginseng root transcriptome using a GS FLX Titanium platform to discover putative genes involved in ginsenoside biosynthesis

(2010) Chao Sun et al.   BMC GENOMICS

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

(2010) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

The Landscape of C. elegans 3'UTRs

(2010) M. Mangone et al.   SCIENCE

mRNA-Seq whole-transcriptome analysis of a single cell

(2009) Fuchou Tang et al.   NATURE METHODS

d14, a Strigolactone-Insensitive Mutant of Rice, Shows an Accelerated Outgrowth of Tillers

(2009) Tomotsugu Arite et al.   PLANT AND CELL PHYSIOLOGY

DWARF27, an Iron-Containing Protein Required for the Biosynthesis of Strigolactones, Regulates Rice Tiller Bud Outgrowth

(2009) H. Lin et al.   PLANT CELL

Switchgrass for bioethanol and other value-added applications: A review

(2008) Deepak R. Keshwani et al.   BIORESOURCE TECHNOLOGY

High-throughput gene and SNP discovery in Eucalyptus grandis, an uncharacterized genome

(2008) Evandro Novaes et al.   BMC GENOMICS

RNA-seq: An assessment of technical reproducibility and comparison with gene expression arrays

(2008) J. C. Marioni et al.   GENOME RESEARCH

Power sequencing

(2008) Brenton R. Graveley   NATURE

Mapping and quantifying mammalian transcriptomes by RNA-Seq

(2008) Ali Mortazavi et al.   NATURE METHODS

RNA-Seq: a revolutionary tool for transcriptomics

(2008) Zhong Wang et al.   NATURE REVIEWS GENETICS

Dual Effects of miR156-Targeted SPL Genes and CYP78A5/KLUH on Plastochron Length and Organ Size in Arabidopsis thaliana

(2008) J.-W. Wang et al.   PLANT CELL

Net energy of cellulosic ethanol from switchgrass

(2008) M. R. Schmer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA