Optimizing experimental procedures for quantitative evaluation of crop plant performance in high throughput phenotyping systems

e!DAL - a framework to store, share and publish research data

(2014) Daniel Arend et al.   BMC BIOINFORMATICS

Phenotyping and beyond: modelling the relationships between traits

(2014) Christine Granier et al.   CURRENT OPINION IN PLANT BIOLOGY

Dissecting the Phenotypic Components of Crop Plant Growth and Drought Responses Based on High-Throughput Image Analysis

(2014) Dijun Chen et al.   PLANT CELL

Integrated Analysis Platform: An Open-Source Information System for High-Throughput Plant Phenotyping

(2014) C. Klukas et al.   PLANT PHYSIOLOGY

Future Scenarios for Plant Phenotyping

(2013) Fabio Fiorani et al.   Annual Review of Plant Biology

Phenoscope: an automated large-scale phenotyping platform offering high spatial homogeneity

(2013) Sébastien Tisné et al.   PLANT JOURNAL

Accounting for variation in designing greenhouse experiments with special reference to greenhouses containing plants on conveyor systems

(2013) Chris J Brien et al.   Plant Methods

RootNav: Navigating Images of Complex Root Architectures

(2013) M. P. Pound et al.   PLANT PHYSIOLOGY

Next-generation phenotyping: requirements and strategies for enhancing our understanding of genotype–phenotype relationships and its relevance to crop improvement

(2013) Joshua N. Cobb et al.   THEORETICAL AND APPLIED GENETICS

Field high-throughput phenotyping: the new crop breeding frontier

(2013) José Luis Araus et al.   TRENDS IN PLANT SCIENCE

Photosynthetic acclimation responses of maize seedlings grown under artificial laboratory light gradients mimicking natural canopy conditions

(2013) Matthias Hirth et al.   Frontiers in Plant Science

Seed Germination and Vigor

(2012) Loïc Rajjou et al.   Annual Review of Plant Biology

Genetic Variation among Inbred Lines and Testcrosses of Maize for Early Growth Parameters and Their Relationship to Final Dry Matter Yield

(2012) Alexander Strigens et al.   CROP SCIENCE

SPICY: towards automated phenotyping of large pepper plants in the greenhouse

(2012) Gerie van der Heijden et al.   FUNCTIONAL PLANT BIOLOGY

GlyPh: a low-cost platform for phenotyping plant growth and water use

(2012) Gustavo A. Pereyra-Irujo et al.   FUNCTIONAL PLANT BIOLOGY

The art of growing plants for experimental purposes: a practical guide for the plant biologist

(2012) Hendrik Poorter et al.   FUNCTIONAL PLANT BIOLOGY

GROWSCREEN-Rhizo is a novel phenotyping robot enabling simultaneous measurements of root and shoot growth for plants grown in soil-filled rhizotrons

(2012) Kerstin A. Nagel et al.   FUNCTIONAL PLANT BIOLOGY

PROTON GRADIENT REGULATION5 Is Essential for Proper Acclimation of Arabidopsis Photosystem I to Naturally and Artificially Fluctuating Light Conditions

(2012) M. Suorsa et al.   PLANT CELL

A tyrosine aminotransferase involved in tocopherol synthesis in Arabidopsis

(2012) David Riewe et al.   PLANT JOURNAL

PhenoPhyte: a flexible affordable method to quantify 2D phenotypes from imagery

(2012) Jason M Green et al.   Plant Methods

Rosette Tracker: An Open Source Image Analysis Tool for Automatic Quantification of Genotype Effects

(2012) J. De Vylder et al.   PLANT PHYSIOLOGY

SmartGrain: High-Throughput Phenotyping Software for Measuring Seed Shape through Image Analysis

(2012) T. Tanabata et al.   PLANT PHYSIOLOGY

HTPheno: An image analysis pipeline for high-throughput plant phenotyping

(2011) Anja Hartmann et al.   BMC BIOINFORMATICS

PHENOPSIS DB: an Information System for Arabidopsis thaliana phenotypic data in an environmental context

(2011) Juliette Fabre et al.   BMC PLANT BIOLOGY

From lab to field, new approaches to phenotyping root system architecture

(2011) Jinming Zhu et al.   CURRENT OPINION IN PLANT BIOLOGY

Survival and growth of Arabidopsis plants given limited water are not equal

(2011) Aleksandra Skirycz et al.   NATURE BIOTECHNOLOGY

Breeding maize as biogas substrate in Central Europe: II. Quantitative-genetic parameters for inbred lines and correlations with testcross performance

(2011) Christoph Grieder et al.   THEORETICAL AND APPLIED GENETICS

Phenomics – technologies to relieve the phenotyping bottleneck

(2011) Robert T. Furbank et al.   TRENDS IN PLANT SCIENCE

ISA software suite: supporting standards-compliant experimental annotation and enabling curation at the community level

(2010) P. Rocca-Serra et al.   BIOINFORMATICS

Sensing technologies for precision specialty crop production

(2010) W.S. Lee et al.   COMPUTERS AND ELECTRONICS IN AGRICULTURE

Phenomics: the next challenge

(2010) David Houle et al.   NATURE REVIEWS GENETICS

Separating parental environment from seed size effects on next generation growth and development in Arabidopsis

(2010) ANGELA L. ELWELL et al.   PLANT CELL AND ENVIRONMENT

Probing the Reproducibility of Leaf Growth and Molecular Phenotypes: A Comparison of Three Arabidopsis Accessions Cultivated in Ten Laboratories

(2010) C. Massonnet et al.   PLANT PHYSIOLOGY

Potential of Wireless Sensor Networks for Measuring Soil Water Content Variability

(2010) H.R. Bogena et al.   VADOSE ZONE JOURNAL

TargetSearch - a Bioconductor package for the efficient preprocessing of GC-MS metabolite profiling data

(2009) Álvaro Cuadros-Inostroza et al.   BMC BIOINFORMATICS

Simultaneous phenotyping of leaf growth and chlorophyll fluorescence via GROWSCREEN FLUORO allows detection of stress tolerance inArabidopsis thalianaand other rosette plants

(2009) Marcus Jansen et al.   FUNCTIONAL PLANT BIOLOGY

Xeml Lab: a tool that supports the design of experiments at a graphical interface and generates computer-readable metadata files, which capture information about genotypes, growth conditions, environmental perturbations and sampling strategy

(2009) JAN HANNEMANN et al.   PLANT CELL AND ENVIRONMENT

HYPOTrace: Image Analysis Software for Measuring Hypocotyl Growth and Shape Demonstrated on Arabidopsis Seedlings Undergoing Photomorphogenesis

(2009) L. Wang et al.   PLANT PHYSIOLOGY

Diel Growth Cycle of Isolated Leaf Discs Analyzed with a Novel, High-Throughput Three-Dimensional Imaging Method Is Identical to That of Intact Leaves

(2009) B. Biskup et al.   PLANT PHYSIOLOGY

With ‘Phenomics,’ Plant Scientists Hope to Shift Breeding Into Overdrive

(2009) Elizabeth Finkel   SCIENCE

LAMINA: a tool for rapid quantification of leaf size and shape parameters

(2008) Max Bylesjö et al.   BMC PLANT BIOLOGY

Thigmomorphogenesis: a complex plant response to mechano-stimulation

(2008) E. W. Chehab et al.   JOURNAL OF EXPERIMENTAL BOTANY