A vocabulary of ancient peptides at the origin of folded proteins

Structural Symmetry in Membrane Proteins

(2015) Lucy R. Forrest   Annual Review of Biophysics

Internal symmetry in protein structures: prevalence, functional relevance and evolution

(2015) Santhanam Balaji   CURRENT OPINION IN STRUCTURAL BIOLOGY

Escherichia coli antitoxin MazE as transcription factor: insights into MazE-DNA binding

(2015) Valentina Zorzini et al.   NUCLEIC ACIDS RESEARCH

The Thalidomide-Binding Domain of Cereblon Defines the CULT Domain Family and Is a New Member of the β-Tent Fold

(2015) Andrei N. Lupas et al.   PLoS Computational Biology

Systematic Detection of Internal Symmetry in Proteins Using CE-Symm

(2014) Douglas Myers-Turnbull et al.   JOURNAL OF MOLECULAR BIOLOGY

Evolutionary relationship of two ancient protein superfolds

(2014) José Arcadio Farías-Rico et al.   Nature Chemical Biology

Computational design of a self-assembling symmetrical β-propeller protein

(2014) Arnout R. D. Voet et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Networks of lexical borrowing and lateral gene transfer in language and genome evolution

(2013) Johann-Mattis List et al.   BIOESSAYS

SCOPe: Structural Classification of Proteins—extended, integrating SCOP and ASTRAL data and classification of new structures

(2013) Naomi K. Fox et al.   NUCLEIC ACIDS RESEARCH

β-Propeller Blades as Ancestral Peptides in Protein Evolution

(2013) Klaus O. Kopec et al.   PLoS One

A primer in macromolecular linguistics

(2012) David B. Searls   BIOPOLYMERS

HHblits: lightning-fast iterative protein sequence searching by HMM-HMM alignment

(2011) Michael Remmert et al.   NATURE METHODS

Modular Evolution and the Origins of Symmetry: Reconstruction of a Three-Fold Symmetric Globular Protein

(2011) Aron Broom et al.   STRUCTURE

Detecting internally symmetric protein structures

(2010) Changhoon Kim et al.   BMC BIOINFORMATICS

Computational and Experimental Evidence for the Evolution of a (βα)8-Barrel Protein from an Ancestral Quarter-Barrel Stabilised by Disulfide Bonds

(2010) Markus Richter et al.   JOURNAL OF MOLECULAR BIOLOGY

Evolution of Outer Membrane β-Barrels from an Ancestral ββ Hairpin

(2010) M. Remmert et al.   MOLECULAR BIOLOGY AND EVOLUTION

Metamorphic proteins mediate evolutionary transitions of structure

(2010) I. Yadid et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Experimental support for the evolution of symmetric protein architecture from a simple peptide motif

(2010) J. Lee et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Structural Characteristics of Novel Protein Folds

(2010) Narcis Fernandez-Fuentes et al.   PLoS Computational Biology

Peeling the Onion: Ribosomes Are Ancient Molecular Fossils

(2009) C. Hsiao et al.   MOLECULAR BIOLOGY AND EVOLUTION

HorA web server to infer homology between proteins using sequence and structural similarity

(2009) B.-H. Kim et al.   NUCLEIC ACIDS RESEARCH

De novo identification of highly diverged protein repeats by probabilistic consistency

(2008) A. Biegert et al.   BIOINFORMATICS

The Last Universal Common Ancestor: emergence, constitution and genetic legacy of an elusive forerunner

(2008) Nicolas Glansdorff et al.   Biology Direct

Cradle-loop barrels and the concept of metafolds in protein classification by natural descent

(2008) Vikram Alva et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

A   -barrel built by the combination of fragments from different folds

(2008) T. A. M. Bharat et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Evolution of the β-propeller fold

(2007) Indronil Chaudhuri et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS