A primer in macromolecular linguistics

Circular Permutation in Proteins

(2012) Spencer Bliven et al.   PLoS Computational Biology

Reducing the worst case running times of a family of RNA and CFG problems, using Valiant's approach

(2011) Shay Zakov et al.   Algorithms for Molecular Biology

A Probabilistic Model for Sequence Alignment with Context-Sensitive Indels

(2011) Glenn Hickey et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

SMART 7: recent updates to the protein domain annotation resource

(2011) I. Letunic et al.   NUCLEIC ACIDS RESEARCH

Language evolution and human history: what a difference a date makes

(2011) R. D. Gray et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

A range of complex probabilistic models for RNA secondary structure prediction that includes the nearest-neighbor model and more

(2011) E. Rivas et al.   RNA

Evaluation of a sophisticated SCFG design for RNA secondary structure prediction

(2011) Markus E. Nebel et al.   THEORY IN BIOSCIENCES

Crystal structure of human cystatin C stabilized against amyloid formation

(2010) Robert Kolodziejczyk et al.   FEBS Journal

A stochastic context free grammar based framework for analysis of protein sequences

(2009) Witold Dyrka et al.   BMC BIOINFORMATICS

Exploiting structural classifications for function prediction: towards a domain grammar for protein function

(2009) Benoît H Dessailly et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

Evolutionary Modeling and Prediction of Non-Coding RNAs in Drosophila

(2009) Robert K. Bradley et al.   PLoS One

Recursive domains in proteins

(2002) Teresa Przytycka et al.   PROTEIN SCIENCE