Selecting informative subsets of sparse supermatrices increases the chance to find correct trees

Overcoming catalytic bias

(2011) Daesung Lee   NATURE

Phylogenomics reveals deep molluscan relationships

(2011) Kevin M. Kocot et al.   NATURE

How Many Bootstrap Replicates Are Necessary?

(2010) Nicholas D. Pattengale et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

A hierarchical model for incomplete alignments in phylogenetic inference

(2009) Fuxia Cheng et al.   BIOINFORMATICS

Mega-phylogeny approach for comparative biology: an alternative to supertree and supermatrix approaches

(2009) Stephen A Smith et al.   BMC EVOLUTIONARY BIOLOGY

Phylogenomics Revives Traditional Views on Deep Animal Relationships

(2009) Hervé Philippe et al.   CURRENT BIOLOGY

Gene Sampling Can Bias Multi-Gene Phylogenetic Inferences: The Relationship between Red Algae and Green Plants as a Case Study

(2009) Y. Inagaki et al.   MOLECULAR BIOLOGY AND EVOLUTION

Using ESTs for phylogenomics: can one accurately infer a phylogenetic tree from a gappy alignment?

(2008) Stefanie Hartmann et al.   BMC EVOLUTIONARY BIOLOGY

Testing the new animal phylogeny: A phylum level molecular analysis of the animal kingdom

(2008) S BOURLAT et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Broad phylogenomic sampling improves resolution of the animal tree of life

(2008) Casey W. Dunn et al.   NATURE

Dealing with incongruence in phylogenomic analyses

(2008) N. Galtier et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Resolving Arthropod Phylogeny: Exploring Phylogenetic Signal within 41 kb of Protein-Coding Nuclear Gene Sequence

(2008) Jerome C. Regier et al.   SYSTEMATIC BIOLOGY

Optimizing Automated AFLP Scoring Parameters to Improve Phylogenetic Resolution

(2008) Barbara R. Holland et al.   SYSTEMATIC BIOLOGY

Testing Congruence in Phylogenomic Analysis

(2008) Jessica W. Leigh et al.   SYSTEMATIC BIOLOGY

COMPUTING THE ALL-PAIRS QUARTET DISTANCE ON A SET OF EVOLUTIONARY TREES

(2008) M. STISSING et al.   Journal of Bioinformatics and Computational Biology