DNA microarray integromics analysis platform

Variable selection for generalized canonical correlation analysis

(2014) A. Tenenhaus et al.   BIOSTATISTICS

Spatio-Chromatic Adaptation via Higher-Order Canonical Correlation Analysis of Natural Images

(2014) Michael U. Gutmann et al.   PLoS One

A practical data processing workflow for multi-OMICS projects

(2013) Michael Kohl et al.   BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS

A probabilistic approach to explore human miRNA targetome by integrating miRNA-overexpression data and sequence information

(2013) Yue Li et al.   BIOINFORMATICS

Familial or Sporadic Idiopathic Scoliosis – classification based on artificial neural network and GAPDH and ACTB transcription profile

(2013) Tomasz Waller et al.   Biomedical Engineering Online

Fast regularized canonical correlation analysis

(2013) Raul Cruz-Cano et al.   COMPUTATIONAL STATISTICS & DATA ANALYSIS

The Reactome pathway knowledgebase

(2013) David Croft et al.   NUCLEIC ACIDS RESEARCH

Data, information, knowledge and principle: back to metabolism in KEGG

(2013) Minoru Kanehisa et al.   NUCLEIC ACIDS RESEARCH

Multiple-platform data integration method with application to combined analysis of microarray and proteomic data

(2012) Shicheng Wu et al.   BMC BIOINFORMATICS

ArrayExpress update—trends in database growth and links to data analysis tools

(2012) Gabriella Rustici et al.   NUCLEIC ACIDS RESEARCH

Quantification of miRNA-mRNA Interactions

(2012) Ander Muniategui et al.   PLoS One

Visualising associations between paired ‘omics’ data sets

(2012) Ignacio González et al.   BioData Mining

Modeling microRNA-mRNA Interactions Using PLS Regression in Human Colon Cancer

(2011) Xiaohong Li et al.   BMC Medical Genomics

Weak seed-pairing stability and high target-site abundance decrease the proficiency of lsy-6 and other microRNAs

(2011) David M Garcia et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Gene Expression Browser: large-scale and cross-experiment microarray data integration, management, search & visualization

(2010) Ming Zhang et al.   BMC BIOINFORMATICS

Improving performance of mammalian microRNA target prediction

(2010) Hui Liu et al.   BMC BIOINFORMATICS

Formation, regulation and evolution of Caenorhabditis elegans 3′UTRs

(2010) Calvin H. Jan et al.   NATURE

Gene set enrichment analysis made simple

(2010) Rafael A Irizarry et al.   STATISTICAL METHODS IN MEDICAL RESEARCH

Lost in translation: an assessment and perspective for computational microRNA target identification

(2009) Panagiotis Alexiou et al.   BIOINFORMATICS

WebArrayDB: cross-platform microarray data analysis and public data repository

(2009) Xiao-Qin Xia et al.   BIOINFORMATICS

Sparse canonical methods for biological data integration: application to a cross-platform study

(2009) Kim-Anh Lê Cao et al.   BMC BIOINFORMATICS

ArrayMining: a modular web-application for microarray analysis combining ensemble and consensus methods with cross-study normalization

(2009) Enrico Glaab et al.   BMC BIOINFORMATICS

MicroRNAs: Target Recognition and Regulatory Functions

(2009) David P. Bartel   CELL

Power analysis of principal components regression in genetic association studies

(2009) Yan-feng Shen et al.   Journal of Zhejiang University-SCIENCE B

MicroRNA and mRNA integrated analysis (MMIA): a web tool for examining biological functions of microRNA expression

(2009) Seungyoon Nam et al.   NUCLEIC ACIDS RESEARCH

Mining Biological Pathways Using WikiPathways Web Services

(2009) Thomas Kelder et al.   PLoS One

Extensions of Sparse Canonical Correlation Analysis with Applications to Genomic Data

(2009) Daniela M Witten et al.   Statistical Applications in Genetics and Molecular Biology

Most mammalian mRNAs are conserved targets of microRNAs

(2008) R. C. Friedman et al.   GENOME RESEARCH

A Sparse PLS for Variable Selection when Integrating Omics Data

(2008) Kim-Anh Lê Cao et al.   Statistical Applications in Genetics and Molecular Biology