A Novel AT-Rich DNA Recognition Mechanism for Bacterial Xenogeneic Silencer MvaT

Integrated circuits: how transcriptional silencing and counter-silencing facilitate bacterial evolution

(2015) W Ryan Will et al.   CURRENT OPINION IN MICROBIOLOGY

Bridged filaments of histone-like nucleoid structuring protein pause RNA polymerase and aid termination in bacteria

(2015) Matthew V Kotlajich et al.   eLife

Expression of multiple horizontally acquired genes is a hallmark of both vertebrate and invertebrate genomes

(2015) Alastair Crisp et al.   GENOME BIOLOGY

Determination and Inference of Eukaryotic Transcription Factor Sequence Specificity

(2014) Matthew T. Weirauch et al.   CELL

Widespread suppression of intragenic transcription initiation by H-NS

(2014) S. S. Singh et al.   GENES & DEVELOPMENT

Locus of Enterocyte Effacement-encoded Regulator (Ler) of PathogenicEscherichia coliCompetes Off Histone-like Nucleoid-structuring Protein (H-NS) through Noncooperative DNA Binding

(2014) Ricksen S. Winardhi et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Absence of a simple code: how transcription factors read the genome

(2014) Matthew Slattery et al.   TRENDS IN BIOCHEMICAL SCIENCES

Bacterial Nucleoid-Associated Protein Uncouples Transcription Levels from Transcription Timing

(2014) I. Zwir et al.   mBio

Mycobacterium tuberculosis Lsr2 Is a Global Transcriptional Regulator Required for Adaptation to Changing Oxygen Levels and Virulence

(2014) I. L. Bartek et al.   mBio

Evolutionary expansion of a regulatory network by counter-silencing

(2014) W. Ryan Will et al.   Nature Communications

Silencing by H-NS Potentiated the Evolution of Salmonella

(2014) Sabrina S. Ali et al.   PLoS Pathogens

DNA A-tracts Are Not Curved in Solutions Containing High Concentrations of Monovalent Cations

(2013) Earle Stellwagen et al.   BIOCHEMISTRY

Regulatory evolution at the host–pathogen interface

(2013) Brian K. Coombes   CANADIAN JOURNAL OF MICROBIOLOGY

Molecular Basis for Sequence-Dependent Induced DNA Bending

(2013) Michael Rettig et al.   CHEMBIOCHEM

Mechanism of DNA organization by Mycobacterium tuberculosis protein Lsr2

(2013) Yuanyuan Qu et al.   NUCLEIC ACIDS RESEARCH

DNAshape: a method for the high-throughput prediction of DNA structural features on a genomic scale

(2013) Tianyin Zhou et al.   NUCLEIC ACIDS RESEARCH

Exploring the costs of horizontal gene transfer

(2013) David A. Baltrus   TRENDS IN ECOLOGY & EVOLUTION

Horizontal gene transfer and the evolution of bacterial and archaeal population structure

(2013) Martin F. Polz et al.   TRENDS IN GENETICS

Silencing of foreign DNA in bacteria

(2012) Sabrina S Ali et al.   CURRENT OPINION IN MICROBIOLOGY

Basis for the Essentiality of H-NS Family Members in Pseudomonas aeruginosa

(2012) Sandra Castang et al.   JOURNAL OF BACTERIOLOGY

The promoter architectural landscape of the Salmonella PhoP regulon

(2012) Igor Zwir et al.   MOLECULAR MICROBIOLOGY

Higher order oligomerization is required for H-NS family member MvaT to form gene-silencing nucleoprotein filament

(2012) Ricksen S. Winardhi et al.   NUCLEIC ACIDS RESEARCH

Molecular basis for recognition of methylated and specific DNA sequences by the zinc finger protein Kaiso

(2012) B. A. Buck-Koehntop et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

CAVER 3.0: A Tool for the Analysis of Transport Pathways in Dynamic Protein Structures

(2012) Eva Chovancova et al.   PLoS Computational Biology

Sequence specificity is obtained from the majority of modular C2H2 zinc-finger arrays

(2011) Kathy N. Lam et al.   NUCLEIC ACIDS RESEARCH

CURVES+ web server for analyzing and visualizing the helical, backbone and groove parameters of nucleic acid structures

(2011) C. Blanchet et al.   NUCLEIC ACIDS RESEARCH

Structural basis for recognition of AT-rich DNA by unrelated xenogeneic silencing proteins

(2011) B. R. G. Gordon et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Indirect DNA Readout by an H-NS Related Protein: Structure of the DNA Complex of the C-Terminal Domain of Ler

(2011) Tiago N. Cordeiro et al.   PLoS Pathogens

Origins of Specificity in Protein-DNA Recognition

(2010) Remo Rohs et al.   Annual Review of Biochemistry

High-order oligomerization is required for the function of the H-NS family member MvaT in Pseudomonas aeruginosa

(2010) Sandra Castang et al.   MOLECULAR MICROBIOLOGY

Lsr2 is a nucleoid-associated protein that targets AT-rich sequences and virulence genes in Mycobacterium tuberculosis

(2010) B. R. G. Gordon et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Evolution of Transcriptional Regulatory Circuits in Bacteria

(2009) J. Christian Perez et al.   CELL

Sequence-specific Recognition of DNA by the C-terminal Domain of Nucleoid-associated Protein H-NS

(2009) Marco Sette et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

TALOS+: a hybrid method for predicting protein backbone torsion angles from NMR chemical shifts

(2009) Yang Shen et al.   JOURNAL OF BIOMOLECULAR NMR

Enzymatic assembly of DNA molecules up to several hundred kilobases

(2009) Daniel G Gibson et al.   NATURE METHODS

Transcription factor function and promoter architecture govern the evolution of bacterial regulons

(2009) J. C. Perez et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The unique structure of A-tracts and intrinsic DNA bending

(2009) Tali E. Haran et al.   QUARTERLY REVIEWS OF BIOPHYSICS

Diversity and Complexity in DNA Recognition by Transcription Factors

(2009) G. Badis et al.   SCIENCE

Variation in Homeodomain DNA Binding Revealed by High-Resolution Analysis of Sequence Preferences

(2008) Michael F. Berger et al.   CELL

A global modulatory role for the Yersinia enterocolitica H-NS protein

(2008) R. C. Banos et al.   MICROBIOLOGY-SGM

H-NS family members function coordinately in an opportunistic pathogen

(2008) S. Castang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA