Rapid Evolution of Recombinant Saccharomyces cerevisiae for Xylose Fermentation through Formation of Extra-chromosomal Circular DNA

Development of a D-xylose fermenting and inhibitor tolerant industrial Saccharomyces cerevisiae strain with high performance in lignocellulose hydrolysates using metabolic and evolutionary engineering

(2013) Mekonnen M Demeke et al.   Biotechnology for Biofuels

Microbial Evolution: Regulatory Design Prevents Cancer-like Overgrowths

(2013) Steven A. Frank   CURRENT BIOLOGY

The Dynamics of Diverse Segmental Amplifications in Populations of Saccharomyces cerevisiae Adapting to Strong Selection

(2013) Celia Payen et al.   G3-Genes Genomes Genetics

Copy-number changes in evolution: rates, fitness effects and adaptive significance

(2013) Vaishali Katju et al.   Frontiers in Genetics

Composition and Structure of Sugarcane Cell Wall Polysaccharides: Implications for Second-Generation Bioethanol Production

(2012) Amanda P. de Souza et al.   BioEnergy Research

Xylose isomerase overexpression along with engineering of the pentose phosphate pathway and evolutionary engineering enable rapid xylose utilization and ethanol production by Saccharomyces cerevisiae

(2012) Hang Zhou et al.   METABOLIC ENGINEERING

Gene duplication as a mechanism of genomic adaptation to a changing environment

(2012) F. A. Kondrashov   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Lignocellulosic biomass for bioethanol production: Current perspectives, potential issues and future prospects

(2012) Alya Limayem et al.   PROGRESS IN ENERGY AND COMBUSTION SCIENCE

Evolutionary engineering of Saccharomyces cerevisiae for improved industrially important properties

(2011) Z. Petek Çakar et al.   FEMS YEAST RESEARCH

Amplification of a Zygosaccharomyces bailii DNA Segment in Wine Yeast Genomes by Extrachromosomal Circular DNA Formation

(2011) Virginie Galeote et al.   PLoS One

Comparing the fermentation performance of Escherichia coli KO11, Saccharomyces cerevisiae 424A(LNH-ST) and Zymomonas mobilis AX101 for cellulosic ethanol production

(2010) Ming W Lau et al.   Biotechnology for Biofuels

Genome-wide computational prediction of tandem gene arrays: application in yeasts

(2010) Laurence Despons et al.   BMC GENOMICS

Whole-genome sequencing of a laboratory-evolved yeast strain

(2010) Carlos L Araya et al.   BMC GENOMICS

Gene Duplication and Environmental Adaptation within Yeast Populations

(2010) Ryan M. Ames et al.   Genome Biology and Evolution

Adaptation to diverse nitrogen-limited environments by deletion or extrachromosomal element formation of the GAP1 locus

(2010) D. Gresham et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Functional Expression of a Bacterial Xylose Isomerase in Saccharomyces cerevisiae

(2009) D. Brat et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Extrachromosomal Circular DNA in Eukaryotes: Possible Involvement in the Plasticity of Tandem Repeats

(2009) S. Cohen et al.   CYTOGENETIC AND GENOME RESEARCH

Mechanisms of change in gene copy number

(2009) P. J. Hastings et al.   NATURE REVIEWS GENETICS

Engineering for biofuels: exploiting innate microbial capacity or importing biosynthetic potential?

(2009) Hal Alper et al.   NATURE REVIEWS MICROBIOLOGY

A Microhomology-Mediated Break-Induced Replication Model for the Origin of Human Copy Number Variation

(2009) P. J. Hastings et al.   PLoS Genetics

Comparative genomics of wild type yeast strains unveils important genome diversity

(2008) Laura Carreto et al.   BMC GENOMICS

Molecular characterization of clonal interference during adaptive evolution in asexual populations of Saccharomyces cerevisiae

(2008) Katy C Kao et al.   NATURE GENETICS

The Repertoire and Dynamics of Evolutionary Adaptations to Controlled Nutrient-Limited Environments in Yeast

(2008) David Gresham et al.   PLoS Genetics