Combinatorial Control of Light Induced Chromatin Remodeling and Gene Activation in Neurospora

Transcriptional refractoriness is dependent on core promoter architecture

(2015) François Cesbron et al.   Nature Communications

Circadian clocks and energy metabolism

(2014) Gencer Sancar et al.   CELLULAR AND MOLECULAR LIFE SCIENCES

CATP is a critical component of the Neurospora circadian clock by regulating the nucleosome occupancy rhythm at the frequency locus

(2014) J. Cha et al.   EMBO REPORTS

CLOCK:BMAL1 is a pioneer-like transcription factor

(2014) J. S. Menet et al.   GENES & DEVELOPMENT

Photochemistry of flavoprotein light sensors

(2014) Karen S Conrad et al.   Nature Chemical Biology

Light-Dependent and Circadian Transcription Dynamics In Vivo Recorded with a Destabilized Luciferase Reporter in Neurospora

(2014) François Cesbron et al.   PLoS One

Genome-Wide Characterization of Light-Regulated Genes in Neurospora crassa

(2014) C. Wu et al.   G3-Genes Genomes Genetics

Neurospora WC-1 Recruits SWI/SNF to Remodel frequency and Initiate a Circadian Cycle

(2014) Bin Wang et al.   PLoS Genetics

Mechanisms and Functions of ATP-Dependent Chromatin-Remodeling Enzymes

(2013) Geeta J. Narlikar et al.   CELL

Circadian timekeeping and output mechanisms in animals

(2013) Paul E Hardin et al.   CURRENT OPINION IN NEUROBIOLOGY

Nucleosome Remodeling and Epigenetics

(2013) P. B. Becker et al.   Cold Spring Harbor Perspectives in Biology

Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration

(2012) H. Thorvaldsdottir et al.   BRIEFINGS IN BIOINFORMATICS

(Re)inventing the Circadian Feedback Loop

(2012) Steven A. Brown et al.   DEVELOPMENTAL CELL

A Global Circadian Repressor Controls Antiphasic Expression of Metabolic Genes in Neurospora

(2011) Gencer Sancar et al.   MOLECULAR CELL

Pioneer factors: directing transcriptional regulators within the chromatin environment

(2011) Luca Magnani et al.   TRENDS IN GENETICS

Photoadaptation in Neurospora by Competitive Interaction of Activating and Inhibitory LOV Domains

(2010) Erik Malzahn et al.   CELL

Transcription Factors in Light and Circadian Clock Signaling Networks Revealed by Genomewide Mapping of Direct Targets for Neurospora White Collar Complex

(2010) Kristina M. Smith et al.   EUKARYOTIC CELL

Neurospora illuminates fungal photoreception

(2010) Chen-Hui Chen et al.   FUNGAL GENETICS AND BIOLOGY

Fast signals and slow marks: the dynamics of histone modifications

(2010) Teresa K. Barth et al.   TRENDS IN BIOCHEMICAL SCIENCES

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

Genome-wide analysis of light-inducible responses reveals hierarchical light signalling in Neurospora

(2009) Chen-Hui Chen et al.   EMBO JOURNAL

Activity of the circadian transcription factor White Collar Complex is modulated by phosphorylation of SP-motifs

(2009) Gencer Sancar et al.   FEBS LETTERS

Genome-wide mapping of nucleosome positions in Schizosaccharomyces pombe

(2009) Alexandra Lantermann et al.   METHODS

MEME SUITE: tools for motif discovery and searching

(2009) T. L. Bailey et al.   NUCLEIC ACIDS RESEARCH

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

Light Activation of the LOV Protein Vivid Generates a Rapidly Exchanging Dimer†‡

(2008) Brian D. Zoltowski et al.   BIOCHEMISTRY

Dynamic Regulation of Nucleosome Positioning in the Human Genome

(2008) Dustin E. Schones et al.   CELL

Transcriptional regulation and function of the Neurospora clock gene white collar 2 and its isoforms

(2008) Andrea Neiss et al.   EMBO REPORTS

Circadian activity and abundance rhythms of the Neurospora clock transcription factor WCC associated with rapid nucleo-cytoplasmic shuttling

(2008) T. Schafmeier et al.   GENES & DEVELOPMENT

Interlocked feedback loops of the circadian clock of Neurospora crassa

(2008) Michael Brunner et al.   MOLECULAR MICROBIOLOGY

Nucleosome organization in the Drosophila genome

(2008) Travis N. Mavrich et al.   NATURE