Evolution of Bow-Tie Architectures in Biology

Mutation Rules and the Evolution of Sparseness and Modularity in Biological Systems

(2013) Tamar Friedlander et al.   PLoS One

The evolutionary origins of modularity

(2013) J. Clune et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Optimizing information flow in small genetic networks. III. A self-interacting gene

(2012) Gašper Tkačik et al.   PHYSICAL REVIEW E

The evolution of layered protocol stacks leads to an hourglass-shaped architecture

(2011) Saamer Akhshabi et al.   ACM SIGCOMM Computer Communication Review

Topology of protein interaction network shapes protein abundances and strengths of their functional and nonspecific interactions

(2011) M. Heo et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Motifs emerge from function in model gene regulatory networks

(2011) Z. Burda et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The evolutionary history of division of labour

(2011) C. Simpson   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Understanding the temporal codes of intra-cellular signals

(2010) Marcelo Behar et al.   CURRENT OPINION IN GENETICS & DEVELOPMENT

Mutational effects and the evolution of new protein functions

(2010) Misha Soskine et al.   NATURE REVIEWS GENETICS

Optimizing information flow in small genetic networks. II. Feed-forward interactions

(2010) Aleksandra M. Walczak et al.   PHYSICAL REVIEW E

Distribution of essential interactions in model gene regulatory networks under mutation-selection balance

(2010) Z. Burda et al.   PHYSICAL REVIEW E

Optimal population coding by noisy spiking neurons

(2010) G. Tkacik et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Network, degeneracy and bow tie integrating paradigms and architectures to grasp the complexity of the immune system

(2010) Paolo Tieri et al.   Theoretical Biology and Medical Modelling

Specialization Can Drive the Evolution of Modularity

(2010) Carlos Espinosa-Soto et al.   PLoS Computational Biology

How the Optic Nerve Allocates Space, Energy Capacity, and Information

(2009) J. A. Perge et al.   JOURNAL OF NEUROSCIENCE

Mutability as an altruistic trait in finite asexual populations

(2009) Adam Lampert et al.   JOURNAL OF THEORETICAL BIOLOGY

Optimizing information flow in small genetic networks

(2009) Gašper Tkačik et al.   PHYSICAL REVIEW E

Funnel Landscape and Mutational Robustness as a Result of Evolution under Thermal Noise

(2009) Ayaka Sakata et al.   PHYSICAL REVIEW LETTERS

G-Protein Coupled Receptor Signaling Architecture of Mammalian Immune Cells

(2009) Natalia Polouliakh et al.   PLoS One

Is Genetic Evolution Predictable?

(2009) D. L. Stern et al.   SCIENCE

An Analytically Solvable Model for Rapid Evolution of Modular Structure

(2009) Nadav Kashtan et al.   PLoS Computational Biology

Constraints imposed by non-functional protein–protein interactions on gene expression and proteome size

(2008) Jingshan Zhang et al.   Molecular Systems Biology

Survival of the sparsest: robust gene networks are parsimonious

(2008) Robert D Leclerc   Molecular Systems Biology

An End to Endless Forms: Epistasis, Phenotype Distribution Bias, and Nonuniform Evolution

(2008) Elhanan Borenstein et al.   PLoS Computational Biology