Mutation Rules and the Evolution of Sparseness and Modularity in Biological Systems

Does Habitat Variability Really Promote Metabolic Network Modularity?

(2013) Kazuhiro Takemoto   PLoS One

The evolutionary origins of modularity

(2013) J. Clune et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Quantifying protein modularity and evolvability: A comparison of different techniques

(2012) Mary Rorick   BIOSYSTEMS

Metabolic network modularity arising from simple growth processes

(2012) Kazuhiro Takemoto   PHYSICAL REVIEW E

Distribution of fixed beneficial mutations and the rate of adaptation in asexual populations

(2012) B. H. Good et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Topology of protein interaction network shapes protein abundances and strengths of their functional and nonspecific interactions

(2011) M. Heo et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Motifs emerge from function in model gene regulatory networks

(2011) Z. Burda et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Inference From a Multiplicative Model of Joint Genetic Effects for Ovarian Cancer Risk

(2010) S. Wacholder et al.   JNCI-Journal of the National Cancer Institute

Mutational effects and the evolution of new protein functions

(2010) Misha Soskine et al.   NATURE REVIEWS GENETICS

RegulonDB version 7.0: transcriptional regulation of Escherichia coli K-12 integrated within genetic sensory response units (Gensor Units)

(2010) S. Gama-Castro et al.   NUCLEIC ACIDS RESEARCH

Distribution of essential interactions in model gene regulatory networks under mutation-selection balance

(2010) Z. Burda et al.   PHYSICAL REVIEW E

Specialization Can Drive the Evolution of Modularity

(2010) Carlos Espinosa-Soto et al.   PLoS Computational Biology

EXTINCTIONS IN HETEROGENEOUS ENVIRONMENTS AND THE EVOLUTION OF MODULARITY

(2009) Nadav Kashtan et al.   EVOLUTION

Mutability as an altruistic trait in finite asexual populations

(2009) Adam Lampert et al.   JOURNAL OF THEORETICAL BIOLOGY

Spontaneous emergence of modularity in a model of evolving individuals and in real networks

(2009) Jiankui He et al.   PHYSICAL REVIEW E

Emergent gene order in a model of modular polyketide synthases

(2009) B. Callahan et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Maximization of the connectivity repertoire as a statistical principle governing the shapes of dendritic arbors

(2009) Q. Wen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

An Analytically Solvable Model for Rapid Evolution of Modular Structure

(2009) Nadav Kashtan et al.   PLoS Computational Biology

Diverse Two-Dimensional Input Functions Control Bacterial Sugar Genes

(2008) Shai Kaplan et al.   MOLECULAR CELL

Evolution of Complex Modular Biological Networks

(2008) Arend Hintze et al.   PLoS Computational Biology

An End to Endless Forms: Epistasis, Phenotype Distribution Bias, and Nonuniform Evolution

(2008) Elhanan Borenstein et al.   PLoS Computational Biology

Facilitated Variation: How Evolution Learns from Past Environments To Generalize to New Environments

(2008) Merav Parter et al.   PLoS Computational Biology

Spontaneous emergence of modularity in cellular networks

(2007) R. V Sole et al.   Journal of the Royal Society Interface