Integrative Analysis of Circadian Transcriptome and Metabolic Network Reveals the Role of De Novo Purine Synthesis in Circadian Control of Cell Cycle

Robust synchronization of coupled circadian and cell cycle oscillators in single mammalian cells

(2014) J. Bieler et al.   Molecular Systems Biology

Phase locking and multiple oscillating attractors for the coupled mammalian clock and cell cycle

(2014) Céline Feillet et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Rhythmic profiles of cell cycle and circadian clock gene transcripts in mice: a possible association between two periodic systems

(2013) Y. Weigl et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

Data, information, knowledge and principle: back to metabolism in KEGG

(2013) Minoru Kanehisa et al.   NUCLEIC ACIDS RESEARCH

Circadian Clock Regulation of the Cell Cycle in the Zebrafish Intestine

(2013) Elodie Peyric et al.   PLoS One

Cyclin-dependent kinase inhibitor p20 controls circadian cell-cycle timing

(2013) R. Laranjeiro et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Circadian Clock Gates the Intestinal Stem Cell Regenerative State

(2013) Phillip Karpowicz et al.   Cell Reports

Analysis of a Gene Regulatory Cascade Mediating Circadian Rhythm in Zebrafish

(2013) Ying Li et al.   PLoS Computational Biology

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

(2013) Daehwan Kim et al.   GENOME BIOLOGY

Circadian clock disruptions and the risk of cancer

(2012) Tuuli Lahti et al.   ANNALS OF MEDICINE

Fulfilling the metabolic requirements for cell proliferation

(2012) Salvador Moncada et al.   BIOCHEMICAL JOURNAL

Light Acts on the Zebrafish Circadian Clock to Suppress Rhythmic Mitosis and Cell Proliferation

(2012) T. Katherine Tamai et al.   JOURNAL OF BIOLOGICAL RHYTHMS

Differential analysis of gene regulation at transcript resolution with RNA-seq

(2012) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

Circadian Timing of Injury-Induced Cell Proliferation in Zebrafish

(2012) Maria Laura Idda et al.   PLoS One

Phosphofructokinase 1 Glycosylation Regulates Cell Growth and Metabolism

(2012) W. Yi et al.   SCIENCE

Rhythmic Nucleotide Synthesis in the Liver: Temporal Segregation of Metabolites

(2012) Jean-Michel Fustin et al.   Cell Reports

Entrainment of the Mammalian Cell Cycle by the Circadian Clock: Modeling Two Coupled Cellular Rhythms

(2012) Claude Gérard et al.   PLoS Computational Biology

Aerobic Glycolysis: Meeting the Metabolic Requirements of Cell Proliferation

(2011) Sophia Y. Lunt et al.   Annual Review of Cell and Developmental Biology

Driving the Cell Cycle Through Metabolism

(2011) Ling Cai et al.   Annual Review of Cell and Developmental Biology

Androgen Receptor and Nutrient Signaling Pathways Coordinate the Demand for Increased Amino Acid Transport during Prostate Cancer Progression

(2011) Q. Wang et al.   CANCER RESEARCH

Cell “circadian” cycle: New role for mammalian core clock genes

(2011) Laurence Borgs et al.   CELL CYCLE

Mammalian cryptochromes impinge on cell cycle progression in a circadian clock-independent manner

(2011) Eugin Destici et al.   CELL CYCLE

IMPDHII Protein Inhibits Toll-like Receptor 2-mediated Activation of NF-κB

(2011) Julie Toubiana et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Purinergic Signals Regulate Daily S-Phase Cell Activity in the Ciliary Marginal Zone of the Zebrafish Retina

(2011) Maria Jimena Ricatti et al.   JOURNAL OF BIOLOGICAL RHYTHMS

The circadian molecular clock creates epidermal stem cell heterogeneity

(2011) Peggy Janich et al.   NATURE

Interactive Tree Of Life v2: online annotation and display of phylogenetic trees made easy

(2011) I. Letunic et al.   NUCLEIC ACIDS RESEARCH

Genome-Wide and Phase-Specific DNA-Binding Rhythms of BMAL1 Control Circadian Output Functions in Mouse Liver

(2011) Guillaume Rey et al.   PLOS BIOLOGY

BiGG: a Biochemical Genetic and Genomic knowledgebase of large scale metabolic reconstructions

(2010) Jan Schellenberger et al.   BMC BIOINFORMATICS

Circadian Cell-Cycle Progression: Cracking Open the Gate

(2010) Jörg Morf et al.   CELL

Elevated ATPase Activity of KaiC Applies a Circadian Checkpoint on Cell Division in Synechococcus elongatus

(2010) Guogang Dong et al.   CELL

CRX ChIP-seq reveals the cis-regulatory architecture of mouse photoreceptors

(2010) J. C. Corbo et al.   GENOME RESEARCH

Circadian Integration of Metabolism and Energetics

(2010) J. Bass et al.   SCIENCE

Circadian Gating of the Cell Cycle Revealed in Single Cyanobacterial Cells

(2010) Q. Yang et al.   SCIENCE

Zebrafish mutations in gart and paics identify crucial roles for de novo purine synthesis in vertebrate pigmentation and ocular development

(2009) A. Ng et al.   DEVELOPMENT

Identification of IMPDH2 as a tumor-associated antigen in colorectal cancer using immunoproteomics analysis

(2009) Yujun He et al.   INTERNATIONAL JOURNAL OF COLORECTAL DISEASE

An inosine 5′-monophosphate dehydrogenase 2 single-nucleotide polymorphism impairs the effect of mycophenolic acid

(2009) W Winnicki et al.   PHARMACOGENOMICS JOURNAL

Temporal self-organization of the cyclin/Cdk network driving the mammalian cell cycle

(2009) C. Gerard et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

CLOCK Is Required for Maintaining the Circadian Rhythms of Opsin mRNA Expression in Photoreceptor Cells

(2008) Ping Li et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Haematopoietic stem cell release is regulated by circadian oscillations

(2008) Simón Méndez-Ferrer et al.   NATURE

Leber congenital amaurosis: Genes, proteins and disease mechanisms

(2008) Anneke I. den Hollander et al.   PROGRESS IN RETINAL AND EYE RESEARCH

Reversible Compartmentalization of de Novo Purine Biosynthetic Complexes in Living Cells

(2008) S. An et al.   SCIENCE