Boolean Network Model Predicts Knockout Mutant Phenotypes of Fission Yeast

Boolean modeling in systems biology: an overview of methodology and applications

(2012) Rui-Sheng Wang et al.   PHYSICAL BIOLOGY

Transcriptional Regulation Is a Major Controller of Cell Cycle Transition Dynamics

(2012) Alessandro Romanel et al.   PLoS One

The Cell in an Era of Systems Biology

(2011) Paul Nurse et al.   CELL

Modeling the Cell Cycle: Why Do Certain Circuits Oscillate?

(2011) James E. Ferrell et al.   CELL

Gene regulatory networks and the role of robustness and stochasticity in the control of gene expression

(2011) L. T. MacNeil et al.   GENOME RESEARCH

A Dynamical Model of Genetic Networks for Cell Differentiation

(2011) Marco Villani et al.   PLoS One

Dynamical and Structural Analysis of a T Cell Survival Network Identifies Novel Candidate Therapeutic Targets for Large Granular Lymphocyte Leukemia

(2011) Assieh Saadatpour et al.   PLoS Computational Biology

Functional Motifs in Biochemical Reaction Networks

(2010) John J. Tyson et al.   Annual Review of Physical Chemistry

A mathematical model for cell size control in fission yeast

(2010) Bo Li et al.   JOURNAL OF THEORETICAL BIOLOGY

Process-based network decomposition reveals backbone motif structure

(2010) G. Wang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A Boolean Model of the Gene Regulatory Network Underlying Mammalian Cortical Area Development

(2010) Clare E. Giacomantonio et al.   PLoS Computational Biology

Computational systems biology of the cell cycle

(2009) A. Csikasz-Nagy   BRIEFINGS IN BIOINFORMATICS

Logical analysis of the budding yeast cell cycle

(2009) D.J. Irons   JOURNAL OF THEORETICAL BIOLOGY

Cell cycle regulation by feed-forward loops coupling transcription and phosphorylation

(2009) Attila Csikász-Nagy et al.   Molecular Systems Biology

From ABC genes to regulatory networks, epigenetic landscapes and flower morphogenesis: Making biological sense of theoretical approaches

(2009) Elena R. Alvarez-Buylla et al.   SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY

Identification of a Topological Characteristic Responsible for the Biological Robustness of Regulatory Networks

(2009) Yangle Wu et al.   PLoS Computational Biology

ON/OFF and Beyond - A Boolean Model of Apoptosis

(2009) Rebekka Schlatter et al.   PLoS Computational Biology

Boolean network models of cellular regulation: prospects and limitations

(2008) S. Bornholdt   Journal of the Royal Society Interface

The transition from differential equations to Boolean networks: A case study in simplifying a regulatory network model

(2008) Maria Davidich et al.   JOURNAL OF THEORETICAL BIOLOGY

Life, logic and information

(2008) Paul Nurse   NATURE

Boolean Network Model Predicts Cell Cycle Sequence of Fission Yeast

(2008) Maria I. Davidich et al.   PLoS One