Among-Character Rate Variation Distributions in Phylogenetic Analysis of Discrete Morphological Characters

Efficacy or convenience? Model-based approaches to phylogeny estimation using morphological data

(2013) Marc R. Spencer et al.   CLADISTICS

Archaeopteryx, paravian phylogenetic analyses, and the use of probability-based methods for palaeontological datasets

(2013) Xing Xu et al.   JOURNAL OF SYSTEMATIC PALAEONTOLOGY

The Placental Mammal Ancestor and the Post-K-Pg Radiation of Placentals

(2013) M. A. O'Leary et al.   SCIENCE

Understanding phylogenetic incongruence: lessons from phyllostomid bats

(2012) Liliana M. Dávalos et al.   BIOLOGICAL REVIEWS

Incorporating phylogenetic uncertainty on phylogeny-based palaeontological dating and the timing of turtle diversification

(2012) Juliana Sterli et al.   CLADISTICS

Improving the Accuracy of Demographic and Molecular Clock Model Comparison While Accommodating Phylogenetic Uncertainty

(2012) Guy Baele et al.   MOLECULAR BIOLOGY AND EVOLUTION

Bayesian Phylogenetics with BEAUti and the BEAST 1.7

(2012) Alexei J. Drummond et al.   MOLECULAR BIOLOGY AND EVOLUTION

PartitionFinder: Combined Selection of Partitioning Schemes and Substitution Models for Phylogenetic Analyses

(2012) R. Lanfear et al.   MOLECULAR BIOLOGY AND EVOLUTION

Molecular phylogenetics: principles and practice

(2012) Ziheng Yang et al.   NATURE REVIEWS GENETICS

A Total-Evidence Approach to Dating with Fossils, Applied to the Early Radiation of the Hymenoptera

(2012) Fredrik Ronquist et al.   SYSTEMATIC BIOLOGY

Robustness of Compound Dirichlet Priors for Bayesian Inference of Branch Lengths

(2012) Chi Zhang et al.   SYSTEMATIC BIOLOGY

Treating Fossils as Terminal Taxa in Divergence Time Estimation Reveals Ancient Vicariance Patterns in the Palpimanoid Spiders

(2012) Hannah Marie Wood et al.   SYSTEMATIC BIOLOGY

MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space

(2012) Fredrik Ronquist et al.   SYSTEMATIC BIOLOGY

Modelling rate distributions using character compatibility: implications for morphological evolution among fossil invertebrates

(2011) P. J. Wagner   Biology Letters

A gigantic bird from the Upper Cretaceous of Central Asia

(2011) D. Naish et al.   Biology Letters

Likelihood reinstates Archaeopteryx as a primitive bird

(2011) M. S. Y. Lee et al.   Biology Letters

Algorithms, data structures, and numerics for likelihood-based phylogenetic inference of huge trees

(2011) Fernando Izquierdo-Carrasco et al.   BMC BIOINFORMATICS

Phylogenetic relationships among superfamilies of Hymenoptera

(2011) Michael J. Sharkey et al.   CLADISTICS

Model Averaging and Bayes Factor Calculation of Relaxed Molecular Clocks in Bayesian Phylogenetics

(2011) W. L. S. Li et al.   MOLECULAR BIOLOGY AND EVOLUTION

Tail Paradox, Partial Identifiability, and Influential Priors in Bayesian Branch Length Inference

(2011) B. Rannala et al.   MOLECULAR BIOLOGY AND EVOLUTION

Eocene lizard from Germany reveals amphisbaenian origins

(2011) Johannes Müller et al.   NATURE

Divergence Time Estimation Using Fossils as Terminal Taxa and the Origins of Lissamphibia

(2011) R. Alexander Pyron   SYSTEMATIC BIOLOGY

BEAGLE: An Application Programming Interface and High-Performance Computing Library for Statistical Phylogenetics

(2011) Daniel L. Ayres et al.   SYSTEMATIC BIOLOGY

Bush Blitz aids description of three new species and a new genus of Australian beeflies (Diptera, Bombyliidae, Exoprosopini)

(2011) Christine Lambkin et al.   ZooKeys

DendroPy: a Python library for phylogenetic computing

(2010) J. Sukumaran et al.   BIOINFORMATICS

Choosing among Partition Models in Bayesian Phylogenetics

(2010) Y. Fan et al.   MOLECULAR BIOLOGY AND EVOLUTION

Progress in erigonine spider phylogeny—the Savignia-group is not monophyletic (Araneae: Linyphiidae)

(2010) Holger Frick et al.   ORGANISMS DIVERSITY & EVOLUTION

Identifying Cliques of Convergent Characters: Concerted Evolution in the Cormorants and Shags

(2010) Barbara R. Holland et al.   SYSTEMATIC BIOLOGY

Rate Heterogeneity, Ancestral Character State Reconstruction, and the Evolution of Limb Morphology in Lerista (Scincidae, Squamata)

(2010) Adam Skinner   SYSTEMATIC BIOLOGY

Improving Marginal Likelihood Estimation for Bayesian Phylogenetic Model Selection

(2010) Wangang Xie et al.   SYSTEMATIC BIOLOGY

Combining Phylogenomics and Fossils in Higher-Level Squamate Reptile Phylogeny: Molecular Data Change the Placement of Fossil Taxa

(2010) John J. Wiens et al.   SYSTEMATIC BIOLOGY

Global phylogeny of Hadrosauridae (Dinosauria: Ornithopoda) using parsimony and Bayesian methods

(2010) ALBERT PRIETO-MÁRQUEZ   ZOOLOGICAL JOURNAL OF THE LINNEAN SOCIETY

The Utility of Morphological Data in Resolving Phylogenetic Relationships of Darters as Exemplified withEtheostoma(Teleostei: Percidae)

(2009) Nicole C. Ayache et al.   Bulletin of the Peabody Museum of Natural History

When Trees Grow Too Long: Investigating the Causes of Highly Inaccurate Bayesian Branch-Length Estimates

(2009) Jeremy M. Brown et al.   SYSTEMATIC BIOLOGY

Testing the Impact of Miniaturization on Phylogeny: Paleozoic Dissorophoid Amphibians

(2009) Nadia B. Fröbisch et al.   SYSTEMATIC BIOLOGY

Cryptic Failure of Partitioned Bayesian Phylogenetic Analyses: Lost in the Land of Long Trees

(2009) David C. Marshall   SYSTEMATIC BIOLOGY

Mosaicism, Modules, and the Evolution of Birds: Results from a Bayesian Approach to the Study of Morphological Evolution Using Discrete Character Data

(2008) Julia A. Clarke et al.   SYSTEMATIC BIOLOGY

Phylogenetic relationships within the South American fish family Anostomidae (Teleostei, Ostariophysi, Characiformes)

(2008) BRIAN L. SIDLAUSKAS et al.   ZOOLOGICAL JOURNAL OF THE LINNEAN SOCIETY