Assessing the phylogeographic history of the montane caddisflyThremma gallicumusing mitochondrial and restriction-site-associated DNA (RAD) markers

Genetic diversity and dispersal potential of the stonefly Dinocras cephalotes in a central European low mountain range

(2014) Vasco Elbrecht et al.   Freshwater Science

Persistence across Pleistocene ice ages in Mediterranean and extra-Mediterranean refugia: phylogeographic insights from the common wall lizard

(2013) Daniele Salvi et al.   BMC EVOLUTIONARY BIOLOGY

Reference-free SNP discovery for the Eurasian beaver from restriction site-associated DNA paired-end data

(2013) Helen Senn et al.   MOLECULAR ECOLOGY

Ancient DNA supports southern survival of Richardson's collared lemming (Dicrostonyx richardsoni) during the last glacial maximum

(2013) Tara L. Fulton et al.   MOLECULAR ECOLOGY

The evolutionary history ofXiphophorusfish and their sexually selected sword: a genome-wide approach using restriction site-associated DNA sequencing

(2013) Julia C. Jones et al.   MOLECULAR ECOLOGY

The population structure and recent colonization history of Oregon threespine stickleback determined using restriction-site associated DNA-sequencing

(2013) Julian Catchen et al.   MOLECULAR ECOLOGY

Adaptive evolution during an ongoing range expansion: the invasive bank vole (Myodes glareolus) in Ireland

(2013) Thomas A. White et al.   MOLECULAR ECOLOGY

Going where traditional markers have not gone before: utility of and promise for RAD sequencing in marine invertebrate phylogeography and population genomics

(2013) A. M. Reitzel et al.   MOLECULAR ECOLOGY

RADseq underestimates diversity and introduces genealogical biases due to nonrandom haplotype sampling

(2013) B. Arnold et al.   MOLECULAR ECOLOGY

A resource of genome-wide single-nucleotide polymorphisms generated by RAD tag sequencing in the critically endangered European eel

(2013) J. M. Pujolar et al.   Molecular Ecology Resources

Integrating phylogenetics, phylogeography and population genetics through genomes and evolutionary theory

(2013) Asher D. Cutter   MOLECULAR PHYLOGENETICS AND EVOLUTION

Extra-Mediterranean refugia: The rule and not the exception?

(2012) Thomas Schmitt et al.   Frontiers in Zoology

A review of glacial geomorphology and chronology in northern Spain: Timing and regional variability during the last glacial cycle

(2012) M. Jiménez-Sánchez et al.   GEOMORPHOLOGY

On the comparison of population-level estimates of haplotype and nucleotide diversity: a case study using the gene cox1 in animals

(2012) W P Goodall-Copestake et al.   HEREDITY

Glacial survival and post-glacial recolonization of an arctic-alpine freshwater insect (Arcynopteryx dichroa, Plecoptera, Perlodidae) in Europe

(2012) Kathrin Theissinger et al.   JOURNAL OF BIOGEOGRAPHY

Bayesian Phylogenetics with BEAUti and the BEAST 1.7

(2012) Alexei J. Drummond et al.   MOLECULAR BIOLOGY AND EVOLUTION

jModelTest 2: more models, new heuristics and parallel computing

(2012) Diego Darriba et al.   NATURE METHODS

Double Digest RADseq: An Inexpensive Method for De Novo SNP Discovery and Genotyping in Model and Non-Model Species

(2012) Brant K. Peterson et al.   PLoS One

Estimates of Genetic Differentiation Measured by FST Do Not Necessarily Require Large Sample Sizes When Using Many SNP Markers

(2012) Eva-Maria Willing et al.   PLoS One

Mountain glaciation and paleoclimate reconstruction in the Picos de Europa (Iberian Peninsula, SW Europe)

(2012) Enrique Serrano et al.   QUATERNARY RESEARCH

The Promises and Pitfalls of Next-Generation Sequencing Data in Phylogeography

(2012) Bryan Carstens et al.   SYSTEMATIC BIOLOGY

Nuclear and mitochondrial phylogeography of the European fire-bellied toads Bombina bombina and Bombina variegata supports their independent histories

(2011) ANNA FIJARCZYK et al.   MOLECULAR ECOLOGY

Next-generation RAD sequencing identifies thousands of SNPs for assessing hybridization between rainbow and westslope cutthroat trout

(2011) PAUL A. HOHENLOHE et al.   Molecular Ecology Resources

Conflicting mitochondrial and nuclear phylogeographic signals and evolution of host-plant shifts in the boreo-montane leaf beetle Chrysomela lapponica

(2011) Patrick Mardulyn et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Applications of next-generation sequencing to phylogeography and phylogenetics

(2011) John E. McCormack et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Extensive linkage disequilibrium and parallel adaptive divergence across threespine stickleback genomes

(2011) P. A. Hohenlohe et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Cryptic biodiversity loss linked to global climate change

(2011) M. Bálint et al.   Nature Climate Change

Stacks : Building and Genotyping Loci De Novo From Short-Read Sequences

(2011) Julian M. Catchen et al.   G3-Genes Genomes Genetics

Genetic population structure of an autumn-emerging caddisfly with inherently low dispersal capacity and insights into its phylogeography

(2010) Stephanie Lehrian et al.   JOURNAL OF THE NORTH AMERICAN BENTHOLOGICAL SOCIETY

Revisiting the Insect Mitochondrial Molecular Clock: The Mid-Aegean Trench Calibration

(2010) A. Papadopoulou et al.   MOLECULAR BIOLOGY AND EVOLUTION

Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows

(2010) LAURENT EXCOFFIER et al.   Molecular Ecology Resources

Population genetics of ecological communities with DNA barcodes: An example from New Guinea Lepidoptera

(2010) K. J. Craft et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Resolving postglacial phylogeography using high-throughput sequencing

(2010) K. J. Emerson et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Steppes, savannahs, forests and phytodiversity reservoirs during the Pleistocene in the Iberian Peninsula

(2010) Penélope González-Sampériz et al.   REVIEW OF PALAEOBOTANY AND PALYNOLOGY

Population Genomics of Parallel Adaptation in Threespine Stickleback using Sequenced RAD Tags

(2010) Paul A. Hohenlohe et al.   PLoS Genetics

Mitochondrial DNA as a marker of molecular diversity: a reappraisal

(2009) N. GALTIER et al.   MOLECULAR ECOLOGY

Refugia revisited: individualistic responses of species in space and time

(2009) J. R. Stewart et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Contrasting patterns of population structure in the montane caddisfliesHydropsyche tenuisandDrusus discolorin the Central European highlands

(2008) STEPHANIE LEHRIAN et al.   FRESHWATER BIOLOGY

Multilocus phylogeography and phylogenetics using sequence-based markers

(2008) Patrícia H. Brito et al.   GENETICA

Timing of glaciation in the Mediterranean mountains during the last cold stage

(2008) Philip D. Hughes et al.   JOURNAL OF QUATERNARY SCIENCE

Differentiation and speciation in mountain streams: a case study in the caddisflyRhyacophila aquitanica(Trichoptera)

(2008) M. Bálint et al.   JOURNAL OF ZOOLOGICAL SYSTEMATICS AND EVOLUTIONARY RESEARCH

The limits of mtDNA phylogeography: complex patterns of population history in a highly structured Iberian lizard are only revealed by the use of nuclear markers

(2008) R. GODINHO et al.   MOLECULAR ECOLOGY

Rapid SNP Discovery and Genetic Mapping Using Sequenced RAD Markers

(2008) Nathan A. Baird et al.   PLoS One

genepop’007: a complete re-implementation of the genepop software for Windows and Linux

(2007) FRANÇOIS ROUSSET   Molecular Ecology Resources