Confinement driven spatial organization of semiflexible ring polymers: Implications for biopolymer packaging

Repulsive Forces Between Looping Chromosomes Induce Entropy-Driven Segregation

(2011) Manfred Bohn et al.   PLoS One

Monte Carlo simulations of a single polystyrene chain in spherical confinement

(2010) Daniel Reith et al.   COMPUTER PHYSICS COMMUNICATIONS

Genome architecture and the role of transcription

(2010) Argyris Papantonis et al.   CURRENT OPINION IN CELL BIOLOGY

The effect of internal and global modes on the radial distribution function of confined semiflexible polymers

(2010) F. Thüroff et al.   EPL

Topological interactions between ring polymers: Implications for chromatin loops

(2010) Manfred Bohn et al.   JOURNAL OF CHEMICAL PHYSICS

Nematic Ordering of Polymers in Confined Geometry Applied to DNA Packaging in Viral Capsids

(2010) Nikolay N. Oskolkov et al.   JOURNAL OF PHYSICAL CHEMISTRY B

Biopolymer organization upon confinement

(2010) D Marenduzzo et al.   JOURNAL OF PHYSICS-CONDENSED MATTER

Stiffening Transition in Semiflexible Cyclic Macromolecules

(2010) Zuzana Benková et al.   MACROMOLECULAR THEORY AND SIMULATIONS

On the Influence of Topological Catenation and Bonding Constraints on Ring Polymers

(2010) Manfred Bohn et al.   MACROMOLECULES

Standard Definitions of Persistence Length Do Not Describe the Local “Intrinsic” Stiffness of Real Polymer Chains

(2010) Hsiao-Ping Hsu et al.   MACROMOLECULES

Excluded Volume Effects on Semiflexible Ring Polymers

(2010) Fabian Drube et al.   NANO LETTERS

Buckling of stiff polymer rings in weak spherical confinement

(2010) Katja Ostermeir et al.   PHYSICAL REVIEW E

Circularization, Photomechanical Switching, and a Supercoiling Transition of Actin Filaments

(2010) T. Sanchez et al.   PHYSICAL REVIEW LETTERS

Strong intranucleoid interactions organize the Escherichia coli chromosome into a nucleoid filament

(2010) P. A. Wiggins et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Confinement induces conformational transition of semiflexible polymer rings to figure eight form

(2010) Katja Ostermeir et al.   Soft Matter

Spatial and Topological Organization of DNA Chains Induced by Gene Co-localization

(2010) Ivan Junier et al.   PLoS Computational Biology

Condensation of isolated semi-flexible filaments driven by depletion interactions

(2009) A. W. C. Lau et al.   EPL

Entropic organization of interphase chromosomes

(2009) Peter R. Cook et al.   JOURNAL OF CELL BIOLOGY

Single polymer confinement in a tube: Correlation between structure and dynamics

(2009) Joshua Kalb et al.   JOURNAL OF CHEMICAL PHYSICS

Channel confinement of flexible and semiflexible macromolecules

(2009) Peter Cifra   JOURNAL OF CHEMICAL PHYSICS

A Model for all Genomes: The Role of Transcription Factories

(2009) Peter R. Cook   JOURNAL OF MOLECULAR BIOLOGY

Filamentous Biopolymers on Surfaces: Atomic Force Microscopy Images Compared with Brownian Dynamics Simulation of Filament Deposition

(2009) Norbert Mücke et al.   PLoS One

Comprehensive Mapping of Long-Range Interactions Reveals Folding Principles of the Human Genome

(2009) E. Lieberman-Aiden et al.   SCIENCE

Average crossing number of Gaussian and equilateral chains with and without excluded volume

(2008) P. M. Diesinger et al.   EUROPEAN PHYSICAL JOURNAL B

Characterization of single semiflexible filaments under geometric constraints

(2008) S. Köster et al.   EUROPEAN PHYSICAL JOURNAL E

Conformation of Circular DNA in Two Dimensions

(2008) Guillaume Witz et al.   PHYSICAL REVIEW LETTERS