Annotation inconsistencies beyond sequence similarity-based function prediction – phylogeny and genome structure

The automated function prediction SIG looks back at 2013 and prepares for 2014

(2014) M. N. Wass et al.   BIOINFORMATICS

Functional Genomics Evidence Unearths New Moonlighting Roles of Outer Ring Coat Nucleoporins

(2014) Katerina R. Katsani et al.   Scientific Reports

Pfam: the protein families database

(2013) Robert D. Finn et al.   NUCLEIC ACIDS RESEARCH

Ureidoglycolate hydrolase, amidohydrolase, lyase: how errors in biological databases are incorporated in scientific papers and vice versa

(2013) R. Percudani et al.   Database-The Journal of Biological Databases and Curation

A survey of error-correction methods for next-generation sequencing

(2012) X. Yang et al.   BRIEFINGS IN BIOINFORMATICS

Experimental evidence validating the computational inference of functional associations from gene fusion events: a critical survey

(2012) V. J. Promponas et al.   BRIEFINGS IN BIOINFORMATICS

Taxonomizing, sizing and overcoming the incidentalome

(2012) Isaac S. Kohane et al.   GENETICS IN MEDICINE

Systematic identification of gene annotation errors in the widely used yeast mutation collections

(2012) Taly Ben-Shitrit et al.   NATURE METHODS

Comparative Genomic Evidence for a Complete Nuclear Pore Complex in the Last Eukaryotic Common Ancestor

(2010) Nadja Neumann et al.   PLoS One

Annotation Error in Public Databases: Misannotation of Molecular Function in Enzyme Superfamilies

(2009) Alexandra M. Schnoes et al.   PLoS Computational Biology