Dynamic changes in host gene expression associated with H5N8 avian influenza virus infection in mice

Analysis of the crow lung transcriptome in response to infection with highly pathogenic H5N1 avian influenza virus

(2015) Periyasamy Vijayakumar et al.   GENE

Avian influenza: no clear indication of how H5N8 virus entered the EU

(2015)   VETERINARY RECORD

HTSeq--a Python framework to work with high-throughput sequencing data

(2014) S. Anders et al.   BIOINFORMATICS

Global gene expression changes in human peripheral blood after H7N9 infection

(2014) Bing Mei et al.   GENE

A novel highly pathogenic H5N8 avian influenza virus isolated from a wild duck in China

(2014) Shengtao Fan et al.   Influenza and Other Respiratory Viruses

H7N9 and Other Pathogenic Avian Influenza Viruses Elicit a Three-Pronged Transcriptomic Signature That Is Reminiscent of 1918 Influenza Virus and Is Associated with Lethal Outcome in Mice

(2014) J. Morrison et al.   JOURNAL OF VIROLOGY

RNA-seq analysis revealed novel genes and signaling pathway associated with disease resistance to avian influenza virus infection in chickens1

(2014) Y. Wang et al.   POULTRY SCIENCE

Transcriptional profiling of the host cell response to feline immunodeficiency virus infection

(2014) Reinhard Ertl et al.   Virology Journal

RNA-seq Analysis of Host and Viral Gene Expression Highlights Interaction between Varicella Zoster Virus and Keratinocyte Differentiation

(2014) Meleri Jones et al.   PLoS Pathogens

Pathobiological features of a novel, highly pathogenic avian influenza A(H5N8) virus

(2014) Young-Il Kim et al.   Emerging Microbes & Infections

TCC: an R package for comparing tag count data with robust normalization strategies

(2013) Jianqiang Sun et al.   BMC BIOINFORMATICS

Specific mutations in H5N1 mainly impact the magnitude and velocity of the host response in mice

(2013) Nicolas Tchitchek et al.   BMC Systems Biology

Regulation of Viral and Cellular Gene Expression by Kaposi's Sarcoma-Associated Herpesvirus Polyadenylated Nuclear RNA

(2013) C. C. Rossetto et al.   JOURNAL OF VIROLOGY

Characterization of three H5N5 and one H5N8 highly pathogenic avian influenza viruses in China

(2013) Kunkun Zhao et al.   VETERINARY MICROBIOLOGY

Moving H5N1 studies into the era of systems biology

(2013) Laurence Josset et al.   VIRUS RESEARCH

Dual Analysis of the Murine Cytomegalovirus and Host Cell Transcriptomes Reveal New Aspects of the Virus-Host Cell Interface

(2013) Vanda Juranic Lisnic et al.   PLoS Pathogens

STAR: ultrafast universal RNA-seq aligner

(2012) Alexander Dobin et al.   BIOINFORMATICS

Ensembl 2013

(2012) Paul Flicek et al.   NUCLEIC ACIDS RESEARCH

IFN-γ Treatment at Early Stages of Influenza Virus Infection Protects Mice from Death in a NK Cell-Dependent Manner

(2010) Ido D. Weiss et al.   JOURNAL OF INTERFERON AND CYTOKINE RESEARCH

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

(2010) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

A Single-Amino-Acid Substitution in a Polymerase Protein of an H5N1 Influenza Virus Is Associated with Systemic Infection and Impaired T-Cell Activation in Mice

(2009) J. L. Fornek et al.   JOURNAL OF VIROLOGY

The TREM-1/DAP12 pathway

(2008) Anja S. Tessarz et al.   IMMUNOLOGY LETTERS