Article
Multidisciplinary Sciences
Ann Collier, Angela Liu, Jessica Torkelson, Jillian Pattison, Sadhana Gaddam, Hanson Zhen, Tiffany Patel, Kelly McCarthy, Hana Ghanim, Anthony E. Oro
Summary: This study identifies a protein called Gibbin as a key regulator of early epithelial morphogenesis. Gibbin interacts with multiple sequence-specific transcription factors and methyl-CpG-binding proteins to regulate the expression of mesoderm genes. The loss of Gibbin leads to increased DNA methylation at GATA3-dependent mesodermal genes, resulting in a loss of signaling between dermal and epidermal cell types.
Article
Biology
Bhagyshree Jamge, Zdravko J. Lorkovic, Elin Axelsson, Akihisa Osakabe, Vikas Shukla, Ramesh Yelagandula, Svetlana Akimcheva, Annika Luisa Kuehn, Frederic Berger
Summary: This study investigates the assembly of histone variants and histone modifications in Arabidopsis thaliana genome and finds that both histone variants and modifications play significant roles in determining chromatin states. Particularly, there are strong associations between H2A variants and specific combinations of histone modifications. The loss of the chromatin remodeler DDM1 affects the exchange of histone variant H2A.Z, resulting in significant effects on the definition and distribution of chromatin states.
Article
Biochemistry & Molecular Biology
Dong Cheng, Zhaoming Dong, Ping Lin, Guanwang Shen, Qingyou Xia
Summary: This study reveals the crucial role of acetylation modification and chromatin accessibility in the transcriptional activation of ecdysone-responsive genes during insect development.
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
(2022)
Review
Cardiac & Cardiovascular Systems
Taseer Ahmad, Lale A. Ertuglu, Sepiso K. Masenga, Thomas R. Kleyman, Annet Kirabo
Summary: The d subunit of the epithelial sodium channel (ENaC) is poorly understood, but recent studies have shown its association with blood pressure, kidney function, inflammation, and salt-induced hypertension. Its expression in human vasculature and antigen presenting cells (APCs) suggests its role in vascular function and immune response.
FRONTIERS IN CARDIOVASCULAR MEDICINE
(2023)
Article
Cell Biology
Nadezda A. Fursova, Anne H. Turberfield, Neil P. Blackledge, Emma L. Findlater, Anna Lastuvkova, Miles K. Huseyin, Paula Dobrinic, Robert J. Klose
Summary: Histone modifications play crucial roles in gene regulation and development, with little known about modifications found broadly throughout the genome. BAP1 deubiquitylase constrains H2AK119ub1 accumulation throughout the genome, impacting gene expression and transcription. Failure to constrain H2AK119ub1 compromises Polycomb complex occupancy at certain target genes, resulting in their derepression.
GENES & DEVELOPMENT
(2021)
Article
Cell Biology
Alexandre Segelle, Yaiza Nunez-Alvarez, Andrew J. Oldfield, Kimberly M. Webb, Philipp Voigt, Reini F. Luco
Summary: Histone modifications play a role in final splicing decisions. In this study, researchers used CRISPR epigenome editing tools and found that a single change in H3K27ac or H3K27me3 levels at the alternatively spliced exon is sufficient to induce splicing changes associated with epithelial-to-mesenchymal transition (EMT). These findings suggest that the dynamic nature of chromatin and its histone marks can rapidly and reversibly regulate alternative splicing in response to cell-extrinsic cues like EMT induction.
Article
Computer Science, Artificial Intelligence
Qiao Liu, Shengquan Chen, Rui Jiang, Wing Hung Wong
Summary: Recent advances in single-cell technologies have enabled large-scale profiling of chromatin accessibility at the single-cell level, but computational analysis faces challenges due to high dimensionality and sparsity of data. Researchers propose a computational tool, scDEC, based on deep generative neural networks for scATAC-seq analysis, showing superior performance in multiple datasets and experimental settings. The generative power of scDEC helps infer cell trajectory and state during differentiation, potentially revealing cell types and within-cell-type variations.
NATURE MACHINE INTELLIGENCE
(2021)
Review
Peripheral Vascular Disease
Stephanie M. Mutchler, Annet Kirabo, Thomas R. Kleyman
Summary: The development of high blood pressure is influenced by genetic and environmental factors, with high salt intake being a known environmental contributor. There is a spectrum of sodium-sensitivity among individuals, partly due to genetic variation in pathways involved in sodium handling and excretion. ENaC plays a crucial role in regulating extracellular fluid volume and blood pressure by facilitating sodium reabsorption in the distal nephron.
Review
Multidisciplinary Sciences
Ipek Selcen, Emily Prentice, Patrizia Casaccia
Summary: This passage focuses on the epigenetic landscape of oligodendrocyte lineage cells, which refers to the cell-specific modifications of DNA, chromatin, and RNA that define a unique gene expression pattern of functionally specialized cells. It discusses the epigenetic changes occurring as progenitors differentiate into myelin-forming cells and respond to the local environment, including modifications of DNA, RNA, nucleosomal histones, chromatin organization, and local remodeling. The passage also explores the relationship between epigenetic modulators and RNA processing, as well as the reciprocal relationship between the epigenome and cell nucleus mechanical properties.
ANNALS OF THE NEW YORK ACADEMY OF SCIENCES
(2023)
Editorial Material
Medicine, General & Internal
Julie R. Ingelfinger
Summary: Opinions about the effects of sodium intake on blood pressure and stroke risk have been varied over the years, but data shows that high sodium intake is associated with increased risks of cardiovascular disease, stroke, and death. Reducing sodium intake while increasing potassium intake can lower blood pressure levels and decrease morbidity.
NEW ENGLAND JOURNAL OF MEDICINE
(2021)
Article
Biochemistry & Molecular Biology
Cecile Evrin, Albert Serra-Cardona, Shoufu Duan, Progya P. Mukherjee, Zhiguo Zhang, Karim P. M. Labib
Summary: In eukaryotes, the essential factor Spt5 plays a direct role in the process of re-deposition of nucleosomal histones during transcription. It contains an acidic amino terminal tail called Spt5N, which has a histone-binding motif that is essential for yeast cell viability.
Review
Biochemistry & Molecular Biology
Thom M. Molenaar, Fred van Leeuwen
Summary: Histone modifying enzymes have important roles in cellular processes and disease. SETD2, for example, methylates histone H3 on lysine 36 (H3K36) during transcription and also methylates non-histone substrates. Understanding the multiple roles of SETD2 is crucial for understanding its role in disease, particularly in cancer where it is frequently inactivated.
CELLULAR AND MOLECULAR LIFE SCIENCES
(2022)
Review
Plant Sciences
Danhua Jiang, Frederic Berger
Summary: The sequence variants of core and linker histones in flowering plants are diverse. Recent studies have shown that specific histone variant enrichment, combined with post-translational modifications of histones, determines different chromatin states that influence specific chromatin functions. Chromatin remodelers play a crucial role in regulating histone variant dynamics and gene transcription in response to the environment. Recognizing histone variants through their specific readers, controlled by histone post-translational modifications, is essential for maintaining genome and chromatin integrity. Additionally, various histone variants are involved in remodeling chromatin domains to facilitate important transitions in the plant life cycle. In this review, recent findings in this exciting research field are discussed, which hold immense promise for surprising discoveries related to the evolution of complexity in plant organization through a seemingly simple protein family.
CURRENT OPINION IN PLANT BIOLOGY
(2023)
Article
Cell Biology
Olga Viktorovskaya, James Chuang, Dhawal Jain, Natalia Reim, Francheska Lopez-Rivera, Magdalena Murawska, Dan Spatt, L. Stirling Churchman, Peter J. Park, Fred Winston
Summary: Essential histone chaperones, Spt6, Spn1/Iws1, and FACT, interact with each other physically and functionally, with novel mutations in FACT identified in this study that do not restore the Spt6-Spn1 interaction. The suppressor mutations in FACT suggest alterations in FACT-nucleosome interactions, highlighting the critical role of histone chaperones in maintaining chromatin integrity during essential cellular processes.
GENES & DEVELOPMENT
(2021)
Article
Multidisciplinary Sciences
Sasha L. Fulton, Wendy Wenderski, Ashley E. Lepack, Andrew L. Eagle, Tomas Fanutza, Ryan M. Bastle, Aarthi Ramakrishnan, Emma C. Hays, Arianna Neal, Jaroslav Bendl, Lorna A. Farrelly, Amni Al-Kachak, Yang Lyu, Bulent Cetin, Jennifer C. Chan, Tina N. Tran, Rachael L. Neve, Randall J. Roper, Kristen J. Brennand, Panos Roussos, John C. Schimenti, Allyson K. Friedman, Li Shen, Robert D. Blitzer, Alfred J. Robison, Gerald R. Crabtree, Ian Maze
Summary: This study found that the chromatin effector BRWD1 encoded by HSA21 was upregulated in the brains of individuals with Down syndrome and trisomic mice. Selective restoration of Brwd1 gene copy numbers rescued cognitive deficits in trisomic animals. The study also showed that Brwd1 binds to the BAF chromatin remodeling complex and increased expression of Brwd1 leads to mistargeting of the BAF chromatin.
NATURE COMMUNICATIONS
(2022)