Contributions of transcription and mRNA decay to gene expression dynamics of fission yeast in response to oxidative stress

Global Analysis of mRNA Isoform Half-Lives Reveals Stabilizing and Destabilizing Elements in Yeast

(2014) Joseph V. Geisberg et al.   CELL

Gene Expression Is Circular: Factors for mRNA Degradation Also Foster mRNA Synthesis

(2013) Gal Haimovich et al.   CELL

A Stress-Activated, p38 Mitogen-Activated Protein Kinase-ATF/CREB Pathway Regulates Posttranscriptional, Sequence-Dependent Decay of Target RNAs

(2013) J. Gao et al.   MOLECULAR AND CELLULAR BIOLOGY

Global Analysis of Eukaryotic mRNA Degradation Reveals Xrn1-Dependent Buffering of Transcript Levels

(2013) Mai Sun et al.   MOLECULAR CELL

Nonsense-Mediated mRNA Decay Controls the Changes in Yeast Ribosomal Protein Pre-mRNAs Levels upon Osmotic Stress

(2013) Elena Garre et al.   PLoS One

Functional characterization of Upf1 targets inSchizosaccharomyces pombe

(2013) Ana M. Matia-González et al.   RNA Biology

RNAi keeps Atf1-bound stress response genes in check at nuclear pores

(2012) K. J. Woolcock et al.   GENES & DEVELOPMENT

Ultrashort and progressive 4sU-tagging reveals key characteristics of RNA processing at nucleotide resolution

(2012) L. Windhager et al.   GENOME RESEARCH

Genome-wide determination of RNA stability reveals hundreds of short-lived noncoding transcripts in mammals

(2012) H. Tani et al.   GENOME RESEARCH

Genome-wide analysis of long noncoding RNA stability

(2012) M. B. Clark et al.   GENOME RESEARCH

Comparative dynamic transcriptome analysis (cDTA) reveals mutual feedback between mRNA synthesis and degradation

(2012) M. Sun et al.   GENOME RESEARCH

Systematic discovery of structural elements governing stability of mammalian messenger RNAs

(2012) Hani Goodarzi et al.   NATURE

Regulation of transcriptome, translation, and proteome in response to environmental stress in fission yeast

(2012) Daniel H Lackner et al.   GENOME BIOLOGY

Widespread promoter-mediated coordination of transcription and mRNA degradation

(2012) Mally Dori-Bachash et al.   GENOME BIOLOGY

Genome-wide studies of mRNA synthesis and degradation in eukaryotes

(2011) José E. Pérez-Ortín et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

Promoter Elements Regulate Cytoplasmic mRNA Decay

(2011) Almog Bregman et al.   CELL

Single-Molecule mRNA Decay Measurements Reveal Promoter- Regulated mRNA Stability in Yeast

(2011) Tatjana Trcek et al.   CELL

Dynamic profiling of mRNA turnover reveals gene-specific and system-wide regulation of mRNA decay

(2011) Sarah E. Munchel et al.   MOLECULAR BIOLOGY OF THE CELL

Nuclear roles and regulation of chromatin structure by the stress-dependent MAP kinase Sty1 of Schizosaccharomyces pombe

(2011) Miriam Sansó et al.   MOLECULAR MICROBIOLOGY

Coupled pre-mRNA and mRNA dynamics unveil operational strategies underlying transcriptional responses to stimuli

(2011) A. Zeisel et al.   Molecular Systems Biology

Dynamic transcriptome analysis measures rates of mRNA synthesis and decay in yeast

(2011) C. Miller et al.   Molecular Systems Biology

Metabolic labeling of RNA uncovers principles of RNA production and degradation dynamics in mammalian cells

(2011) Michal Rabani et al.   NATURE BIOTECHNOLOGY

Heat Shock Response in Yeast Involves Changes in Both Transcription Rates and mRNA Stabilities

(2011) Laia Castells-Roca et al.   PLoS One

Diverse environmental stresses elicit distinct responses at the level of pre-mRNA processing in yeast

(2011) M. Bergkessel et al.   RNA

Genome-Wide Analysis of Nascent Transcription in Saccharomyces cerevisiae

(2011) Anastasia McKinlay et al.   G3-Genes Genomes Genetics

Transcriptome Kinetics Is Governed by a Genome-Wide Coupling of mRNA Production and Degradation: A Role for RNA Pol II

(2011) Ophir Shalem et al.   PLoS Genetics

Major role for mRNA stability in shaping the kinetics of gene induction

(2010) Ran Elkon et al.   BMC GENOMICS

RNA Polymerase II Subunits Link Transcription and mRNA Decay to Translation

(2010) Liat Harel-Sharvit et al.   CELL

Minireview: Global Regulation and Dynamics of Ribonucleic Acid

(2010) Jack D. Keene   ENDOCRINOLOGY

Global coordination of transcriptional control and mRNA decay during cellular differentiation

(2010) Maria J Amorim et al.   Molecular Systems Biology

Identification of RNA recognition elements in the Saccharomyces cerevisiae transcriptome

(2010) Daniel P. Riordan et al.   NUCLEIC ACIDS RESEARCH

Genomic Binding Profiling of the Fission Yeast Stress-Activated MAPK Sty1 and the bZIP Transcriptional Activator Atf1 in Response to H2O2

(2010) Majid Eshaghi et al.   PLoS One

Genome-wide analysis of mRNA decay patterns during early Drosophila development

(2010) Stefan Thomsen et al.   GENOME BIOLOGY

RNA polymerase mapping during stress responses reveals widespread nonproductive transcription in yeast

(2010) Tae Soo Kim et al.   GENOME BIOLOGY

Growth control and ribosome biogenesis

(2009) Harri Lempiäinen et al.   CURRENT OPINION IN CELL BIOLOGY

Timing of Gene Expression Responses to Environmental Changes

(2009) Gal Chechik et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Dissection of a complex transcriptional response using genome-wide transcriptional modelling

(2009) Martino Barenco et al.   Molecular Systems Biology

mRNA stability changes precede changes in steady-state mRNA amounts during hyperosmotic stress

(2009) C. Molin et al.   RNA

Specific and global regulation of mRNA stability during osmotic stress in Saccharomyces cerevisiae

(2009) L. Romero-Santacreu et al.   RNA

Regulon-Specific Control of Transcription Elongation across the Yeast Genome

(2009) Vicent Pelechano et al.   PLoS Genetics

Transcription in the nucleus and mRNA decay in the cytoplasm are coupled processes

(2008) V. Goler-Baron et al.   GENES & DEVELOPMENT

Comprehensive Transcriptional Analysis of the Oxidative Response in Yeast

(2008) María Micaela Molina-Navarro et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Transient transcriptional responses to stress are generated by opposing effects of mRNA production and degradation

(2008) Ophir Shalem et al.   Molecular Systems Biology

Activity motifs reveal principles of timing in transcriptional control of the yeast metabolic network

(2008) Gal Chechik et al.   NATURE BIOTECHNOLOGY

Tuning gene expression to changing environments: from rapid responses to evolutionary adaptation

(2008) Luis López-Maury et al.   NATURE REVIEWS GENETICS

High-resolution gene expression profiling for simultaneous kinetic parameter analysis of RNA synthesis and decay

(2008) L. Dolken et al.   RNA

Rapidly regulated genes are intron poor

(2008) Daniel C. Jeffares et al.   TRENDS IN GENETICS

RNA polymerase II stalling: loading at the start prepares genes for a sprint

(2008) Jia Wu et al.   GENOME BIOLOGY

Multiple Pathways Differentially Regulate Global Oxidative Stress Responses in Fission Yeast

(2007) Dongrong Chen et al.   MOLECULAR BIOLOGY OF THE CELL