Sequence-based identification of 3D structural modules in RNA with RMDetect

Assemble: an interactive graphical tool to analyze and build RNA architectures at the 2D and 3D levels

(2010) F. Jossinet et al.   BIOINFORMATICS

Atomic accuracy in predicting and designing noncanonical RNA structure

(2010) Rhiju Das et al.   NATURE METHODS

NMR structure and dynamics of the Specifier Loop domain from the Bacillus subtilis tyrS T box leader RNA

(2010) Jiachen Wang et al.   NUCLEIC ACIDS RESEARCH

RNAMotifScan: automatic identification of RNA structural motifs using secondary structural alignment

(2010) Cuncong Zhong et al.   NUCLEIC ACIDS RESEARCH

The amazing world of bacterial structured RNAs

(2010) Eric Westhof   GENOME BIOLOGY

Comparative genomics reveals 104 candidate structured RNAs from bacteria, archaea, and their metagenomes

(2010) Zasha Weinberg et al.   GENOME BIOLOGY

VARNA: Interactive drawing and editing of the RNA secondary structure

(2009) Kévin Darty et al.   BIOINFORMATICS

Exceptional structured noncoding RNAs revealed by bacterial metagenome analysis

(2009) Zasha Weinberg et al.   NATURE

Finding 3D motifs in ribosomal RNA structures

(2009) A. Apostolico et al.   NUCLEIC ACIDS RESEARCH

The Structure of the Ribosome with Elongation Factor G Trapped in the Posttranslocational State

(2009) Y.-G. Gao et al.   SCIENCE

The MC-Fold and MC-Sym pipeline infers RNA structure from sequence data

(2008) Marc Parisien et al.   NATURE

Structural insights into amino acid binding and gene control by a lysine riboswitch

(2008) Alexander Serganov et al.   NATURE

Rfam: updates to the RNA families database

(2008) P. P. Gardner et al.   NUCLEIC ACIDS RESEARCH

Automated motif extraction and classification in RNA tertiary structures

(2008) M. Djelloul et al.   RNA