Let there be light: zebrafish neurobiology and the optogenetic revolution

Circuit Neuroscience in Zebrafish

(2010) Rainer W. Friedrich et al.   CURRENT BIOLOGY

The Branched Photocycle of the Slow-Cycling Channelrhodopsin-2 Mutant C128T

(2010) Katja Stehfest et al.   JOURNAL OF MOLECULAR BIOLOGY

Optogenetic Localization and Genetic Perturbation of Saccade-Generating Neurons in Zebrafish

(2010) P. J. Schoonheim et al.   JOURNAL OF NEUROSCIENCE

Computational processing of optical measurements of neuronal and synaptic activity in networks

(2010) Mario M. Dorostkar et al.   JOURNAL OF NEUROSCIENCE METHODS

Visualizing voltage dynamics in zebrafish heart

(2010) Hidekazu Tsutsui et al.   JOURNAL OF PHYSIOLOGY-LONDON

Olfactory pattern classification by discrete neuronal network states

(2010) Jörn Niessing et al.   NATURE

High-performance genetically targetable optical neural silencing by light-driven proton pumps

(2010) Brian Y. Chow et al.   NATURE

MAZe: a tool for mosaic analysis of gene function in zebrafish

(2010) Russell T Collins et al.   NATURE METHODS

Imaging brain electric signals with genetically targeted voltage-sensitive fluorescent proteins

(2010) Walther Akemann et al.   NATURE METHODS

Ultrafast optogenetic control

(2010) Lisa A Gunaydin et al.   NATURE NEUROSCIENCE

A genetically targeted optical sensor to monitor calcium signals in astrocyte processes

(2010) Eiji Shigetomi et al.   NATURE NEUROSCIENCE

Monitoring neural activity with bioluminescence during natural behavior

(2010) Eva A Naumann et al.   NATURE NEUROSCIENCE

Optogenetic interrogation of neural circuits: technology for probing mammalian brain structures

(2010) Feng Zhang et al.   Nature Protocols

Pathway-Specific Feedforward Circuits between Thalamus and Neocortex Revealed by Selective Optical Stimulation of Axons

(2010) Scott J. Cruikshank et al.   NEURON

Holographic Photolysis for Multiple Cell Stimulation in Mouse Hippocampal Slices

(2010) Morad Zahid et al.   PLoS One

Two-photon single-cell optogenetic control of neuronal activity by sculpted light

(2010) B. K. Andrasfalvy et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Characterization of Engineered Channelrhodopsin Variants with Improved Properties and Kinetics

(2009) John Y. Lin et al.   BIOPHYSICAL JOURNAL

Transposon-mediated BAC transgenesis in zebrafish and mice

(2009) Maximiliano L Suster et al.   BMC GENOMICS

Genetic and optical targeting of neural circuits and behavior—zebrafish in the spotlight

(2009) Herwig Baier et al.   CURRENT OPINION IN NEUROBIOLOGY

Adaptation of GAL4 activators for GAL4 enhancer trapping in zebrafish

(2009) Eri Ogura et al.   DEVELOPMENTAL DYNAMICS

The Gal4/UAS toolbox in zebrafish: new approaches for defining behavioral circuits

(2009) Ethan K. Scott   JOURNAL OF NEUROCHEMISTRY

The subcellular organization of neocortical excitatory connections

(2009) Leopoldo Petreanu et al.   NATURE

Optogenetic dissection of a behavioural module in the vertebrate spinal cord

(2009) Claire Wyart et al.   NATURE

Lighting up neural networks using a new generation of genetically encoded calcium sensors

(2009) Christian D Wilms et al.   NATURE METHODS

A genetically encoded reporter of synaptic activity in vivo

(2009) Elena Dreosti et al.   NATURE METHODS

Imaging neural activity in worms, flies and mice with improved GCaMP calcium indicators

(2009) Lin Tian et al.   NATURE METHODS

Bi-stable neural state switches

(2009) André Berndt et al.   NATURE NEUROSCIENCE

Transformation of odor representations in target areas of the olfactory bulb

(2009) Emre Yaksi et al.   NATURE NEUROSCIENCE

Subcellular Topography of Visually Driven Dendritic Activity in the Vertebrate Visual System

(2009) Johann H. Bollmann et al.   NEURON

Temporal Control of Immediate Early Gene Induction by Light

(2009) Philipp Schoenenberger et al.   PLoS One

Two-photon excitation of channelrhodopsin-2 at saturation

(2009) J. P. Rickgauer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Optical control of zebrafish behavior with halorhodopsin

(2009) A. B. Arrenberg et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Optogenetic Catechism

(2009) G. Miesenbock   SCIENCE

Genetically Encoded Calcium Indicators

(2008) Marco Mank et al.   CHEMICAL REVIEWS

Escape Behavior Elicited by Single, Channelrhodopsin-2-Evoked Spikes in Zebrafish Somatosensory Neurons

(2008) Adam D. Douglass et al.   CURRENT BIOLOGY

Targeted gene expression by the Gal4-UAS system in zebrafish

(2008) Kazuhide Asakawa et al.   DEVELOPMENT GROWTH & DIFFERENTIATION

Mifepristone-inducible LexPR system to drive and control gene expression in transgenic zebrafish

(2008) Alexander Emelyanov et al.   DEVELOPMENTAL BIOLOGY

G2R Cre reporter transgenic zebrafish

(2008) Shunichi Yoshikawa et al.   DEVELOPMENTAL DYNAMICS

Generation of oocyte-specifically expressed cre transgenic zebrafish for female germline excision of loxp-flanked transgene

(2008) Xingjun Liu et al.   DEVELOPMENTAL DYNAMICS

Using imaging and genetics in zebrafish to study developing spinal circuitsin vivo

(2008) David L. McLean et al.   Developmental Neurobiology

Multiple functions of GABAAand GABABreceptors during pattern processing in the zebrafish olfactory bulb

(2008) Rico Tabor et al.   EUROPEAN JOURNAL OF NEUROSCIENCE

Chemical calcium indicators

(2008) R. Madelaine Paredes et al.   METHODS

Entrained rhythmic activities of neuronal ensembles as perceptual memory of time interval

(2008) Germán Sumbre et al.   NATURE

Improving membrane voltage measurements using FRET with new fluorescent proteins

(2008) Hidekazu Tsutsui et al.   NATURE METHODS

Emergence of binocular functional properties in a monocular neural circuit

(2008) Pavan Ramdya et al.   NATURE NEUROSCIENCE

Control of visually guided behavior by distinct populations of spinal projection neurons

(2008) Michael B Orger et al.   NATURE NEUROSCIENCE

Red-shifted optogenetic excitation: a tool for fast neural control derived from Volvox carteri

(2008) Feng Zhang et al.   NATURE NEUROSCIENCE

Genetic Dissection of Neural Circuits

(2008) Liqun Luo et al.   NEURON

Patterned two-photon illumination by spatiotemporal shaping of ultrashort pulses

(2008) Eirini Papagiakoumou et al.   OPTICS EXPRESS

Engineering of a Genetically Encodable Fluorescent Voltage Sensor Exploiting Fast Ci-VSP Voltage-Sensing Movements

(2008) Alicia Lundby et al.   PLoS One

Genetic dissection of neural circuits by Tol2 transposon-mediated Gal4 gene and enhancer trapping in zebrafish

(2008) K. Asakawa et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Gal4/UAS Transgenic Tools and Their Application to Zebrafish

(2008) Marnie E. Halpern et al.   Zebrafish

Genetic and Physiologic Dissection of the Vertebrate Cardiac Conduction System

(2008) Neil C Chi et al.   PLOS BIOLOGY

Fiber-coupled light-emitting diode for localized photostimulation of neurons expressing channelrhodopsin-2

(2007) Luke Campagnola et al.   JOURNAL OF NEUROSCIENCE METHODS