Approximate Bayesian Computation of diversification rates from molecular phylogenies: introducing a new efficient summary statistic, the nLTT

Phylogenetic approaches for studying diversification

(2014) Hélène Morlon   ECOLOGY LETTERS

Likelihood Inference of Non-Constant Diversification Rates with Incomplete Taxon Sampling

(2014) Sebastian Höhna   PLoS One

Fast simulation of reconstructed phylogenies under global time-dependent birth–death processes

(2013) Sebastian Höhna   BIOINFORMATICS

Adaptive approximate Bayesian computation for complex models

(2013) Maxime Lenormand et al.   COMPUTATIONAL STATISTICS

Recovering speciation and extinction dynamics based on phylogenies

(2013) T. Stadler   JOURNAL OF EVOLUTIONARY BIOLOGY

Birth–death models and coalescent point processes: The shape and probability of reconstructed phylogenies

(2013) Amaury Lambert et al.   THEORETICAL POPULATION BIOLOGY

Approximate Bayesian Computation

(2013) Mikael Sunnåker et al.   PLoS Computational Biology

SIMULATION-BASED LIKELIHOOD APPROACH FOR EVOLUTIONARY MODELS OF PHENOTYPIC TRAITS ON PHYLOGENY

(2012) Nobuyuki Kutsukake et al.   EVOLUTION

FITTING MODELS OF CONTINUOUS TRAIT EVOLUTION TO INCOMPLETELY SAMPLED COMPARATIVE DATA USING APPROXIMATE BAYESIAN COMPUTATION

(2011) Graham J. Slater et al.   EVOLUTION

NEUTRAL BIODIVERSITY THEORY CAN EXPLAIN THE IMBALANCE OF PHYLOGENETIC TREES BUT NOT THE TEMPO OF THEIR DIVERSIFICATION

(2011) T. Jonathan Davies et al.   EVOLUTION

Reconciling molecular phylogenies with the fossil record

(2011) H. Morlon et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Mammalian phylogeny reveals recent diversification rate shifts

(2011) T. Stadler   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Lack of confidence in approximate Bayesian computation model choice

(2011) C. P. Robert et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Diversity-dependence brings molecular phylogenies closer to agreement with the fossil record

(2011) R. S. Etienne et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

An adaptive sequential Monte Carlo method for approximate Bayesian computation

(2011) Pierre Del Moral et al.   STATISTICS AND COMPUTING

Phylogenetic Inference of Reciprocal Effects between Geographic Range Evolution and Diversification

(2011) Emma E. Goldberg et al.   SYSTEMATIC BIOLOGY

Prolonging the Past Counteracts the Pull of the Present: Protracted Speciation Can Explain Observed Slowdowns in Diversification

(2011) Rampal S. Etienne et al.   SYSTEMATIC BIOLOGY

Bayesian design strategies for synthetic biology

(2011) C. P. Barnes et al.   Interface Focus

Approximate Bayesian Computation in Evolution and Ecology

(2010) Mark A. Beaumont   Annual Review of Ecology Evolution and Systematics

Estimation of Parameters for Macroparasite Population Evolution Using Approximate Bayesian Computation

(2010) C. C. Drovandi et al.   BIOMETRICS

HIV with contact tracing: a case study in approximate Bayesian computation

(2010) M. G. B. Blum et al.   BIOSTATISTICS

TIME-DEPENDENT SPECIATION AND EXTINCTION FROM PHYLOGENIES: A LEAST SQUARES APPROACH

(2010) Emmanuel Paradis   EVOLUTION

Likelihood-Free Inference of Population Structure and Local Adaptation in a Bayesian Hierarchical Model

(2010) E. Bazin et al.   GENETICS

Interpreting the γ Statistic in Phylogenetic Diversification Rate Studies: A Rate Decrease Does Not Necessarily Indicate an Early Burst

(2010) James A. Fordyce   PLoS One

Time, Species, and Separating Their Effects on Trait Variance in Clades

(2010) Folmer Bokma   SYSTEMATIC BIOLOGY

The Shape and Temporal Dynamics of Phylogenetic Trees Arising from Geographic Speciation

(2010) Alex L. Pigot et al.   SYSTEMATIC BIOLOGY

Approximate Bayesian Computation (ABC) in practice

(2010) Katalin Csilléry et al.   TRENDS IN ECOLOGY & EVOLUTION

Non-linear regression models for Approximate Bayesian Computation

(2009) Michael G. B. Blum et al.   STATISTICS AND COMPUTING

Estimating Trait-Dependent Speciation and Extinction Rates from Incompletely Resolved Phylogenies

(2009) Richard G. FitzJohn et al.   SYSTEMATIC BIOLOGY

Heritability of Extinction Rates Links Diversification Patterns in Molecular Phylogenies and Fossils

(2009) Daniel L. Rabosky   SYSTEMATIC BIOLOGY

Inferring the parameters of the neutral theory of biodiversity using phylogenetic information and implications for tropical forests

(2008) Franck Jabot et al.   ECOLOGY LETTERS

EXPLOSIVE EVOLUTIONARY RADIATIONS: DECREASING SPECIATION OR INCREASING EXTINCTION THROUGH TIME?

(2008) Daniel L. Rabosky et al.   EVOLUTION

Approximate Bayesian computation scheme for parameter inference and model selection in dynamical systems

(2008) T. Toni et al.   Journal of the Royal Society Interface

Density-dependent diversification in North American wood warblers

(2008) D. L Rabosky et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES