SInCRe—structural interactome computational resource forMycobacterium tuberculosis

Enriching the annotation of Mycobacterium tuberculosis H37Rv proteome using remote homology detection approaches: Insights into structure and function

(2015) Gayatri Ramakrishnan et al.   TUBERCULOSIS

CHOPIN: a web resource for the structural and functional proteome of Mycobacterium tuberculosis

(2015) Bernardo Ochoa-Montaño et al.   Database-The Journal of Biological Databases and Curation

Characterizing the pocketome of Mycobacterium tuberculosis and application in rationalizing polypharmacological target selection

(2014) Praveen Anand et al.   Scientific Reports

STITCH 4: integration of protein–chemical interactions with user data

(2013) Michael Kuhn et al.   NUCLEIC ACIDS RESEARCH

Osmosensory signaling in Mycobacterium tuberculosis mediated by a eukaryotic-like Ser/Thr protein kinase

(2013) S. K. Hatzios et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

TIMBAL v2: update of a database holding small molecules modulating protein–protein interactions

(2013) Alicia P. Higueruelo et al.   Database-The Journal of Biological Databases and Curation

CREDO: a structural interactomics database for drug discovery

(2013) Adrian M. Schreyer et al.   Database-The Journal of Biological Databases and Curation

Role of Mycobacterium tuberculosis pknD in the Pathogenesis of central nervous system tuberculosis

(2012) Nicholas A Be et al.   BMC MICROBIOLOGY

targetTB: A target identification pipeline for Mycobacterium tuberculosis through an interactome, reactome and genome-scale structural analysis

(2012) Karthik Raman et al.   BMC Systems Biology

New and continuing developments at PROSITE

(2012) Christian J. A. Sigrist et al.   NUCLEIC ACIDS RESEARCH

Structure-based systems biology for analyzing off-target binding

(2011) Lei Xie et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

PocketAlign A Novel Algorithm for Aligning Binding Sites in Protein Structures

(2011) Kalidas Yeturu et al.   Journal of Chemical Information and Modeling

HHblits: lightning-fast iterative protein sequence searching by HMM-HMM alignment

(2011) Michael Remmert et al.   NATURE METHODS

ChEMBL: a large-scale bioactivity database for drug discovery

(2011) A. Gaulton et al.   NUCLEIC ACIDS RESEARCH

The Pfam protein families database

(2011) M. Punta et al.   NUCLEIC ACIDS RESEARCH

Structural Annotation of Mycobacterium tuberculosis Proteome

(2011) Praveen Anand et al.   PLoS One

Drug Discovery Using Chemical Systems Biology: Weak Inhibition of Multiple Kinases May Contribute to the Anti-Cancer Effect of Nelfinavir

(2011) Li Xie et al.   PLoS Computational Biology

Accelerated Profile HMM Searches

(2011) Sean R. Eddy   PLoS Computational Biology

Cytoscape Web: an interactive web-based network browser

(2010) Christian T. Lopes et al.   BIOINFORMATICS

Analysis and hit filtering of a very large library of compounds screened against Mycobacterium tuberculosis

(2010) Sean Ekins et al.   Molecular BioSystems

ModBase, a database of annotated comparative protein structure models, and associated resources

(2010) U. Pieper et al.   NUCLEIC ACIDS RESEARCH

PharmMapper server: a web server for potential drug target identification using pharmacophore mapping approach

(2010) Xiaofeng Liu et al.   NUCLEIC ACIDS RESEARCH

DrugBank 3.0: a comprehensive resource for 'Omics' research on drugs

(2010) C. Knox et al.   NUCLEIC ACIDS RESEARCH

The STRING database in 2011: functional interaction networks of proteins, globally integrated and scored

(2010) D. Szklarczyk et al.   NUCLEIC ACIDS RESEARCH

Effect of PstS sub-units or PknD deficiency on the survival of Mycobacterium tuberculosis

(2010) Frederic Vanzembergh et al.   TUBERCULOSIS

TB database 2010: Overview and update

(2010) James E. Galagan et al.   TUBERCULOSIS

TubercuList – 10 years after

(2010) Jocelyne M. Lew et al.   TUBERCULOSIS

EasyMIFs and SiteHound: a toolkit for the identification of ligand-binding sites in protein structures

(2009) Dario Ghersi et al.   BIOINFORMATICS

PocketMatch: A new algorithm to compare binding sites in protein structures

(2009) Kalidas Yeturu et al.   BMC BIOINFORMATICS

AutoDock Vina: Improving the speed and accuracy of docking with a new scoring function, efficient optimization, and multithreading

(2009) Oleg Trott et al.   JOURNAL OF COMPUTATIONAL CHEMISTRY

PURE: A webserver for the prediction of domains in unassigned regions in proteins

(2008) Chilamakuri CS Reddy et al.   BMC BIOINFORMATICS

Validation of protein models by a neural network approach

(2008) Paolo Mereghetti et al.   BMC BIOINFORMATICS

Doomsday postponed? Preventing and reversing epidemics of drug-resistant tuberculosis

(2008) Christopher Dye   NATURE REVIEWS MICROBIOLOGY

TB database: an integrated platform for tuberculosis research

(2008) T. B. K. Reddy et al.   NUCLEIC ACIDS RESEARCH

Mycobacterial Ser/Thr protein kinases and phosphatases: Physiological roles and therapeutic potential

(2007) Annemarie Wehenkel et al.   BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS

PocketDepth: A new depth based algorithm for identification of ligand binding sites in proteins

(2007) Yeturu Kalidas et al.   JOURNAL OF STRUCTURAL BIOLOGY