Fast protein folding kinetics

Atomistic Description of the Folding of a Dimeric Protein

(2013) Stefano Piana et al.   JOURNAL OF PHYSICAL CHEMISTRY B

Using VIPT-Jump to Distinguish Between Different Folding Mechanisms: Application to BBL and a Trpzip

(2013) Chun-Wei Lin et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

NMR paves the way for atomic level descriptions of sparsely populated, transiently formed biomolecular conformers

(2013) A. Sekhar et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Misplaced helix slows down ultrafast pressure-jump protein folding

(2013) M. B. Prigozhin et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Stepwise protein folding at near amino acid resolution by hydrogen exchange and mass spectrometry

(2013) W. Hu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Order out of Disorder: Working Cycle of an Intrinsically Unfolded Chaperone

(2012) Dana Reichmann et al.   CELL

Downhill Protein Folding Modules as Scaffolds for Broad-Range Ultrafast Biosensors

(2012) Michele Cerminara et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Raising the Speed Limit for β-Hairpin Formation

(2012) Caitlin M. Davis et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Systematic Validation of Protein Force Fields against Experimental Data

(2012) Kresten Lindorff-Larsen et al.   PLoS One

Evaluating the Effects of Cutoffs and Treatment of Long-range Electrostatics in Protein Folding Simulations

(2012) Stefano Piana et al.   PLoS One

Single-Molecule Fluorescence Experiments Determine Protein Folding Transition Path Times

(2012) H. S. Chung et al.   SCIENCE

Achieving Secondary Structural Resolution in Kinetic Measurements of Protein Folding: A Case Study of the Folding Mechanism of Trp-cage

(2011) Robert M. Culik et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

Reducing Lambda Repressor to the Core

(2011) Maxim B. Prigozhin et al.   JOURNAL OF PHYSICAL CHEMISTRY B

The Fast and the Slow: Folding and Trapping of λ6–85

(2011) Maxim B. Prigozhin et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

α-Synuclein occurs physiologically as a helically folded tetramer that resists aggregation

(2011) Tim Bartels et al.   NATURE

Visualizing a one-way protein encounter complex by ultrafast single-molecule mixing

(2011) Yann Gambin et al.   NATURE METHODS

Revisiting the NMR Structure of the Ultrafast Downhill Folding Protein gpW from Bacteriophage λ

(2011) Lorenzo Sborgi et al.   PLoS One

How Fast-Folding Proteins Fold

(2011) K. Lindorff-Larsen et al.   SCIENCE

A Survey of λ Repressor Fragments from Two-State to Downhill Folding

(2010) Feng Liu et al.   JOURNAL OF MOLECULAR BIOLOGY

Computational Design and Experimental Testing of the Fastest-Folding β-Sheet Protein

(2010) Stefano Piana et al.   JOURNAL OF MOLECULAR BIOLOGY

Molecular Simulation ofab InitioProtein Folding for a Millisecond Folder NTL9(1−39)

(2010) Vincent A. Voelz et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Capillarity theory for the fly-casting mechanism

(2010) E. Trizac et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

An unlocking/relocking barrier in conformational fluctuations of villin headpiece subdomain

(2010) A. Reiner et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Structure, function, and folding of phosphoglycerate kinase are strongly perturbed by macromolecular crowding

(2010) Apratim Dhar et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Diffusion, Crowding & Protein Stability in a Dynamic Molecular Model of the Bacterial Cytoplasm

(2010) Sean R. McGuffee et al.   PLoS Computational Biology

Direct Observation of Downhill Folding of λ -Repressor in a Microfluidic Mixer

(2009) Stephen J. DeCamp et al.   BIOPHYSICAL JOURNAL

Slowing Down Downhill Folding: A Three-Probe Study

(2009) Seung Joong Kim et al.   BIOPHYSICAL JOURNAL

Force Field Bias in Protein Folding Simulations

(2009) Peter L. Freddolino et al.   BIOPHYSICAL JOURNAL

Relaxation Dispersion NMR Spectroscopy as a Tool for Detailed Studies of Protein Folding

(2009) Philipp Neudecker et al.   BIOPHYSICAL JOURNAL

Long-timescale molecular dynamics simulations of protein structure and function

(2009) John L Klepeis et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

A one-dimensional free energy surface does not account for two-probe folding kinetics of protein α3D

(2009) Feng Liu et al.   JOURNAL OF CHEMICAL PHYSICS

The transition state transit time of WW domain folding is controlled by energy landscape roughness

(2009) Feng Liu et al.   JOURNAL OF CHEMICAL PHYSICS

Progress and challenges in the automated construction of Markov state models for full protein systems

(2009) Gregory R. Bowman et al.   JOURNAL OF CHEMICAL PHYSICS

Molecules: What Kind of a Bag of Atoms?†

(2009) Praveen D. Chowdary et al.   JOURNAL OF PHYSICAL CHEMISTRY A

ϕ-Value Analysis for Ultrafast Folding Proteins by NMR Relaxation Dispersion

(2009) Jae-Hyun Cho et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Reaching the protein folding speed limit with large, sub-microsecond pressure jumps

(2009) Charles Dumont et al.   NATURE METHODS

Folding energy landscape of cytochrome cb562

(2009) T. Kimura et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The importance of being quantitative

(2009) Luis Alberto Campos et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Evaluating  -turn mimics as  -sheet folding nucleators

(2009) A. A. Fuller et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Direct observation of barrier-limited folding of BBL by single-molecule fluorescence resonance energy transfer

(2009) F. Huang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Experimental determination of upper bound for transition path times in protein folding from single-molecule photon-by-photon trajectories

(2009) H. S. Chung et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Single-molecule spectroscopy of the temperature-induced collapse of unfolded proteins

(2009) D. Nettels et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Coordinate-dependent diffusion in protein folding

(2009) R. B. Best et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Constructing the equilibrium ensemble of folding pathways from short off-equilibrium simulations

(2009) Frank Noé et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Ten-Microsecond Molecular Dynamics Simulation of a Fast-Folding WW Domain

(2008) Peter L. Freddolino et al.   BIOPHYSICAL JOURNAL

XPD Helicase Structures and Activities: Insights into the Cancer and Aging Phenotypes from XPD Mutations

(2008) Li Fan et al.   CELL

Downhill dynamics and the molecular rate of protein folding

(2008) Feng Liu et al.   CHEMICAL PHYSICS LETTERS

Protein folding studied by single-molecule FRET

(2008) Benjamin Schuler et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

Ruggedness in the folding landscape of protein L

(2008) Steven A. Waldauer et al.   HFSP Journal

Comparison of multiple crystal structures with NMR data for engrailed homeodomain

(2008) Tomasz L. Religa   JOURNAL OF BIOMOLECULAR NMR

The Kinetic and Equilibrium Molten Globule Intermediates of Apoleghemoglobin Differ in Structure

(2008) Chiaki Nishimura et al.   JOURNAL OF MOLECULAR BIOLOGY

Downhill versus Barrier-Limited Folding of BBL 2: Mechanistic Insights from Kinetics of Folding Monitored by Independent Tryptophan Probes

(2008) Hannes Neuweiler et al.   JOURNAL OF MOLECULAR BIOLOGY

Expanding the Realm of Ultrafast Protein Folding: gpW, a Midsize Natural Single-Domain with α+β Topology that Folds Downhill

(2008) Adam Fung et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Computing the stability diagram of the Trp-cage miniprotein

(2008) D. Paschek et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Crowded, cell-like environment induces shape changes in aspherical protein

(2008) D. Homouz et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Origins of barriers and barrierless folding in BBL

(2008) S. S. Cho et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Hierarchical folding mechanism of apomyoglobin revealed by ultra-fast H/D exchange coupled with 2D NMR

(2008) T. Uzawa et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Interconversion between two unrelated protein folds in the lymphotactin native state

(2008) Robbyn L. Tuinstra et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Measuring internal friction of an ultrafast-folding protein

(2008) T. Cellmer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

An experimental survey of the transition between two-state and downhill protein folding scenarios

(2008) F. Liu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA