Advances in automated NMR protein structure determination

Markov dynamic models for long-timescale protein motion

(2010) T.-H. Chiang et al.   BIOINFORMATICS

Protein 3D structure determination by high-resolution solid-state NMR

(2010) Antoine Loquet et al.   COMPTES RENDUS CHIMIE

SAGA: rapid automatic mainchain NMR assignment for large proteins

(2010) Gordon M. Crippen et al.   JOURNAL OF BIOMOLECULAR NMR

Detection of unrealistic molecular environments in protein structures based on expected electron densities

(2010) Simon W. Ginzinger et al.   JOURNAL OF BIOMOLECULAR NMR

A Monte Carlo/simulated annealing algorithm for sequential resonance assignment in solid state NMR of uniformly labeled proteins with magic-angle spinning

(2010) Robert Tycko et al.   JOURNAL OF MAGNETIC RESONANCE

Structure, Dynamics, and RNA Interaction Analysis of the Human SBDS Protein

(2010) Juliana Ferreira de Oliveira et al.   JOURNAL OF MOLECULAR BIOLOGY

Protein mapping gains a human focus

(2010) Heidi Ledford   NATURE

Direct visualization of secondary structures of F-actin by electron cryomicroscopy

(2010) Takashi Fujii et al.   NATURE

Predicting protein structures with a multiplayer online game

(2010) Seth Cooper et al.   NATURE

Solid-state NMR and SAXS studies provide a structural basis for the activation of αB-crystallin oligomers

(2010) Stefan Jehle et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Solution structure of the cap-independent translational enhancer and ribosome-binding element in the 3' UTR of turnip crinkle virus

(2010) X. Zuo et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Biomolecular NMR data analysis

(2010) Michael R. Gryk et al.   PROGRESS IN NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY

Structure-oriented methods for protein NMR data analysis

(2010) Guillermo A. Bermejo et al.   PROGRESS IN NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY

NMR in structural proteomics and beyond

(2010) Lucia Banci et al.   PROGRESS IN NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY

Interpreting protein chemical shift data

(2010) David S. Wishart   PROGRESS IN NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY

Paramagnetic tagging for protein structure and dynamics analysis

(2010) Peter H.J. Keizers et al.   PROGRESS IN NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY

SAIL – stereo-array isotope labeling

(2010) Masatsune Kainosho et al.   QUARTERLY REVIEWS OF BIOPHYSICS

NMR Structure Determination for Larger Proteins Using Backbone-Only Data

(2010) S. Raman et al.   SCIENCE

A Transient and Low-Populated Protein-Folding Intermediate at Atomic Resolution

(2010) Dmitry M. Korzhnev et al.   SCIENCE

Using NMR Chemical Shifts as Structural Restraints in Molecular Dynamics Simulations of Proteins

(2010) Paul Robustelli et al.   STRUCTURE

Lessons from Structural Genomics

(2009) Thomas C. Terwilliger et al.   Annual Review of Biophysics

PICKY: a novel SVD-based NMR spectra peak picking method

(2009) B. Alipanahi et al.   BIOINFORMATICS

Structural Convergence between Cryo-EM and NMR Reveals Intersubunit Interactions Critical for HIV-1 Capsid Function

(2009) In-Ja L. Byeon et al.   CELL

NMR chemical shift data and ab initio shielding calculations: emerging tools for protein structure determination

(2009) Frans A. A. Mulder et al.   CHEMICAL SOCIETY REVIEWS

Prediction of Xaa-Pro peptide bond conformation from sequence and chemical shifts

(2009) Yang Shen et al.   JOURNAL OF BIOMOLECULAR NMR

Robust structure-based resonance assignment for functional protein studies by NMR

(2009) Dirk Stratmann et al.   JOURNAL OF BIOMOLECULAR NMR

Automated NMR structure determination of stereo-array isotope labeled ubiquitin from minimal sets of spectra using the SAIL-FLYA system

(2009) Teppei Ikeya et al.   JOURNAL OF BIOMOLECULAR NMR

High-resolution protein structure determination starting with a global fold calculated from exact solutions to the RDC equations

(2009) Jianyang Zeng et al.   JOURNAL OF BIOMOLECULAR NMR

TALOS+: a hybrid method for predicting protein backbone torsion angles from NMR chemical shifts

(2009) Yang Shen et al.   JOURNAL OF BIOMOLECULAR NMR

Automated protein structure calculation from NMR data

(2009) Mike P. Williamson et al.   JOURNAL OF BIOMOLECULAR NMR

4D prediction of protein 1H chemical shifts

(2009) Juuso Lehtivarjo et al.   JOURNAL OF BIOMOLECULAR NMR

DANGLE: A Bayesian inferential method for predicting protein backbone dihedral angles and secondary structure

(2009) Ming-Sin Cheung et al.   JOURNAL OF MAGNETIC RESONANCE

Folding of Small Proteins by Monte Carlo Simulations with Chemical Shift Restraints without the Use of Molecular Fragment Replacement or Structural Homology

(2009) Paul Robustelli et al.   JOURNAL OF PHYSICAL CHEMISTRY B

Toward a Unified Representation of Protein Structural Dynamics in Solution

(2009) Phineus R. L. Markwick et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Determination of Multicomponent Protein Structures in Solution Using Global Orientation and Shape Restraints

(2009) Jinbu Wang et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Fast and Accurate Predictions of Protein NMR Chemical Shifts from Interatomic Distances

(2009) Kai J. Kohlhoff et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Accurate Automated Protein NMR Structure Determination Using Unassigned NOESY Data

(2009) Srivatsan Raman et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

High-Resolution Solid-State NMR Structure of a 17.6 kDa Protein

(2009) Ivano Bertini et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

NMR spectroscopy brings invisible protein states into focus

(2009) Andrew J Baldwin et al.   Nature Chemical Biology

CASD-NMR: critical assessment of automated structure determination by NMR

(2009) Antonio Rosato et al.   NATURE METHODS

Nature of the protein universe

(2009) M. Levitt   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Automated NMR assignment and protein structure determination using sparse dipolar coupling constraints

(2009) Bruce R. Donald et al.   PROGRESS IN NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY

Probabilistic Interaction Network of Evidence Algorithm and its Application to Complete Labeling of Peak Lists from Protein NMR Spectroscopy

(2009) Arash Bahrami et al.   PLoS Computational Biology

Probing Invisible, Low-Populated States of Protein Molecules by Relaxation Dispersion NMR Spectroscopy: An Application to Protein Folding

(2008) Dmitry M. Korzhnev et al.   ACCOUNTS OF CHEMICAL RESEARCH

3D Protein Structures by Solid-State NMR Spectroscopy: Ready for High Resolution

(2008) Anja Böckmann   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

Macromolecular Modeling with Rosetta

(2008) Rhiju Das et al.   Annual Review of Biochemistry

Contact replacement for NMR resonance assignment

(2008) F. Xiong et al.   BIOINFORMATICS

ISD: a software package for Bayesian NMR structure calculation

(2008) W. Rieping et al.   BIOINFORMATICS

Recent Progress and Future Directions in Protein-Protein Docking

(2008) David Ritchie   CURRENT PROTEIN & PEPTIDE SCIENCE

Structural proteomics by NMR spectroscopy

(2008) Joon Shin et al.   Expert Review of Proteomics

Automated sequence-specific protein NMR assignment using the memetic algorithm MATCH

(2008) Jochen Volk et al.   JOURNAL OF BIOMOLECULAR NMR

Structure-based protein NMR assignments using native structural ensembles

(2008) Mehmet Serkan Apaydın et al.   JOURNAL OF BIOMOLECULAR NMR

Automated assignment of NMR chemical shifts using peak-particle dynamics simulation with the DYNASSIGN algorithm

(2008) Roland Schmucki et al.   JOURNAL OF BIOMOLECULAR NMR

Sequence specific resonance assignment via Multicanonical Monte Carlo search using an ABACUS approach

(2008) Alexander Lemak et al.   JOURNAL OF BIOMOLECULAR NMR

Automated amino acid side-chain NMR assignment of proteins using 13C- and 15N-resolved 3D [1H,1H]-NOESY

(2008) Francesco Fiorito et al.   JOURNAL OF BIOMOLECULAR NMR

A structure refinement protocol combining NMR residual dipolar couplings and small angle scattering restraints

(2008) F. Gabel et al.   JOURNAL OF BIOMOLECULAR NMR

Assignment of protein NMR spectra based on projections, multi-way decomposition and a fast correlation approach

(2008) Doroteya K. Staykova et al.   JOURNAL OF BIOMOLECULAR NMR

Solution NMR structure determination of proteins revisited

(2008) Martin Billeter et al.   JOURNAL OF BIOMOLECULAR NMR

The war of tools: how can NMR spectroscopists detect errors in their structures?

(2008) Edoardo Saccenti et al.   JOURNAL OF BIOMOLECULAR NMR

Solution structure of tRNAVal from refinement of homology model against residual dipolar coupling and SAXS data

(2008) Alexander Grishaev et al.   JOURNAL OF BIOMOLECULAR NMR

De novo protein structure generation from incomplete chemical shift assignments

(2008) Yang Shen et al.   JOURNAL OF BIOMOLECULAR NMR

APSY-NMR with proteins: practical aspects and backbone assignment

(2008) Sebastian Hiller et al.   JOURNAL OF BIOMOLECULAR NMR

3D Structure Determination of the Crh Protein from Highly Ambiguous Solid-State NMR Restraints

(2008) Antoine Loquet et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Deuterated Protein Folds Obtained Directly from Unassigned Nuclear Overhauser Effect Data

(2008) Guillermo A. Bermejo et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Protein Structure Determination from13C Spin-Diffusion Solid-State NMR Spectroscopy

(2008) Theofanis Manolikas et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

16-Fold Degeneracy of Peptide Plane Orientations from Residual Dipolar Couplings: Analytical Treatment and Implications for Protein Structure Determination

(2008) Jean-Christophe Hus et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Biomolecular simulation and modelling: status, progress and prospects

(2008) M. W van der Kamp et al.   Journal of the Royal Society Interface

NMR: prediction of molecular alignment from structure using the PALES software

(2008) Markus Zweckstetter   Nature Protocols

CS23D: a web server for rapid protein structure generation using NMR chemical shifts and sequence data

(2008) D. S. Wishart et al.   NUCLEIC ACIDS RESEARCH

Paramagnetic shifts in solid-state NMR of proteins to elicit structural information

(2008) S. Balayssac et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Consistent blind protein structure generation from NMR chemical shift data

(2008) Y. Shen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Stable isotope labeling methods for protein NMR spectroscopy

(2008) Shin-ya Ohki et al.   PROGRESS IN NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY

Characterization of protein secondary structure from NMR chemical shifts

(2008) Steven P. Mielke et al.   PROGRESS IN NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY

Improving NMR protein structure quality by Rosetta refinement: A molecular replacement study

(2008) Theresa A. Ramelot et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Influence of different assignment conditions on the determination of symmetric homodimeric structures with ARIA

(2008) Benjamin Bardiaux et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Determination of Protein Structures in the Solid State from NMR Chemical Shifts

(2008) Paul Robustelli et al.   STRUCTURE

Structural Biology by NMR: Structure, Dynamics, and Interactions

(2008) Phineus R. L. Markwick et al.   PLoS Computational Biology

Solution Structure of the C-terminal Dimerization Domain of SARS Coronavirus Nucleocapsid Protein Solved by the SAIL-NMR Method

(2007) Mitsuhiro Takeda et al.   JOURNAL OF MOLECULAR BIOLOGY