Proteomic analysis of formalin-fixed paraffin-embedded renal tissue samples by label-free MS: Assessment of overall technical variability and the impact of block age

Toward deciphering proteomes of formalin-fixed paraffin-embedded (FFPE) tissues

(2012) Sameh Magdeldin et al.   PROTEOMICS

Impact of pre-analytical factors on the proteomic analysis of formalin-fixed paraffin-embedded tissue

(2012) Seonaid M. Thompson et al.   Proteomics Clinical Applications

Proteome of formalin-fixed paraffin-embedded pancreatic ductal adenocarcinoma and lymph node metastases

(2011) Kalnisha Naidoo et al.   JOURNAL OF PATHOLOGY

High Recovery FASP Applied to the Proteomic Analysis of Microdissected Formalin Fixed Paraffin Embedded Cancer Tissues Retrieves Known Colon Cancer Markers

(2011) Jacek R. Wiśniewski et al.   JOURNAL OF PROTEOME RESEARCH

Andromeda: A Peptide Search Engine Integrated into the MaxQuant Environment

(2011) Jürgen Cox et al.   JOURNAL OF PROTEOME RESEARCH

Exome sequencing identifies frequent mutation of the SWI/SNF complex gene PBRM1 in renal carcinoma

(2011) Ignacio Varela et al.   NATURE

Proteome, Phosphoproteome, and N-Glycoproteome Are Quantitatively Preserved in Formalin-Fixed Paraffin-Embedded Tissue and Analyzable by High-Resolution Mass Spectrometry

(2010) Paweł Ostasiewicz et al.   JOURNAL OF PROTEOME RESEARCH

Initial Development and Validation of a Novel Extraction Method for Quantitative Mining of the Formalin-Fixed, Paraffin-Embedded Tissue Proteome for Biomarker Investigations

(2010) Niroshini J. Nirmalan et al.   JOURNAL OF PROTEOME RESEARCH

Proteomic analysis of formalin-fixed, paraffin-embedded lung neuroendocrine tumor samples from hospital archives

(2010) Alessandro Tanca et al.   Journal of Proteomics

Systematic sequencing of renal carcinoma reveals inactivation of histone modifying genes

(2010) Gillian L. Dalgliesh et al.   NATURE

Banking of clinical samples for proteomic biomarker studies: A consideration of logistical issues with a focus on pre-analytical variation

(2010) David H. Jackson et al.   Proteomics Clinical Applications

Quantitative proteomics using formalin-fixed paraffin-embedded tissues of oral squamous cell carcinoma

(2009) Ayako Negishi et al.   CANCER SCIENCE

Proteomics on Fixed Tissue Specimens – A Review

(2009) Beth Reimel et al.   Current Proteomics

Evaluation of Archival Time on Shotgun Proteomics of Formalin-Fixed and Paraffin-Embedded Tissues

(2009) Brian M. Balgley et al.   JOURNAL OF PROTEOME RESEARCH

Proteomic analysis of laser-microdissected paraffin-embedded tissues: (1) Stage-related protein candidates upon non-metastatic lung adenocarcinoma

(2009) Takeshi Kawamura et al.   Journal of Proteomics

Grade-dependent Proteomics Characterization of Kidney Cancer

(2009) Bertrand Perroud et al.   MOLECULAR & CELLULAR PROTEOMICS

Equivalence of Protein Inventories Obtained from Formalin-fixed Paraffin-embedded and Frozen Tissue in Multidimensional Liquid Chromatography-Tandem Mass Spectrometry Shotgun Proteomic Analysis

(2009) Robert W. Sprung et al.   MOLECULAR & CELLULAR PROTEOMICS

Universal sample preparation method for proteome analysis

(2009) Jacek R Wiśniewski et al.   NATURE METHODS

Proteomic Analysis of Laser-Captured Paraffin-Embedded Tissues: A Molecular Portrait of Head and Neck Cancer Progression

(2008) V. Patel et al.   CLINICAL CANCER RESEARCH

Antigen Retrieval for Proteomic Characterization of Formalin-Fixed and Paraffin-Embedded Tissues

(2008) Haifeng Xu et al.   JOURNAL OF PROTEOME RESEARCH

MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification

(2008) Jürgen Cox et al.   NATURE BIOTECHNOLOGY