Toward deciphering proteomes of formalin-fixed paraffin-embedded (FFPE) tissues

Using quantitative proteomic analysis to understand genotype specific intrinsic drug resistance in melanoma

(2015) John M. Koomen et al.   Oncotarget

Molecular characterisation of formalin-fixed paraffin-embedded (FFPE) breast tumour specimens using a custom 512-gene breast cancer bead array-based platform

(2011) M Abramovitz et al.   BRITISH JOURNAL OF CANCER

Quantitative Determination of Estrogen Receptor, Progesterone Receptor, and HER2 mRNA in Formalin-fixed Paraffin-embedded Tissue—A New Option for Predictive Biomarker Assessment in Breast Cancer

(2011) Berit Maria Müller et al.   DIAGNOSTIC MOLECULAR PATHOLOGY

KRAS Mutation Detection in Paired Frozen and Formalin-Fixed Paraffin-Embedded (FFPE) Colorectal Cancer Tissues

(2011) Jérome Solassol et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

A quantitative proteomic analysis of FFPE melanoma

(2011) Stephanie Byrum et al.   JOURNAL OF CUTANEOUS PATHOLOGY

High Recovery FASP Applied to the Proteomic Analysis of Microdissected Formalin Fixed Paraffin Embedded Cancer Tissues Retrieves Known Colon Cancer Markers

(2011) Jacek R. Wiśniewski et al.   JOURNAL OF PROTEOME RESEARCH

Impact of fixation time on GeLC–MS/MS proteomic profiling of formalin-fixed, paraffin-embedded tissues

(2011) Alessandro Tanca et al.   Journal of Proteomics

Protein phosphorylation analysis in archival clinical cancer samples by shotgun and targeted proteomics approaches

(2011) Angelo Gámez-Pozo et al.   Molecular BioSystems

Proteomic analysis of formalin-fixed paraffin-embedded tissue by MALDI imaging mass spectrometry

(2011) Rita Casadonte et al.   Nature Protocols

Proteomic Analysis of Formalin-Fixed Paraffin-Embedded Pancreatic Tissue Using Liquid Chromatography Tandem Mass Spectrometry

(2011) Joao A. Paulo et al.   PANCREAS

Discovery of New Molecular Subtypes in Oesophageal Adenocarcinoma

(2011) Daniela Berg et al.   PLoS One

Protein Microarray-based Comparison of HER2, Estrogen Receptor, and Progesterone Receptor Status in Core Biopsies and Surgical Specimens From FFPE Breast Cancer Tissues

(2011) Daniela Berg et al.   APPLIED IMMUNOHISTOCHEMISTRY & MOLECULAR MORPHOLOGY

Histo-proteomic profiling of formalin-fixed, paraffin-embedded tissue

(2010) Kant M Matsuda et al.   Expert Review of Proteomics

Quantitative Proteomic Analysis of Formalin-fixed and Paraffin-embedded Nasopharyngeal Carcinoma Using iTRAQ Labeling, Two-dimensional Liquid Chromatography, and Tandem Mass Spectrometry

(2010) Zhefeng Xiao et al.   JOURNAL OF HISTOCHEMISTRY & CYTOCHEMISTRY

Formalin-Fixed Paraffin-Embedded (FFPE) Proteome Analysis Using Gel-Free and Gel-Based Proteomics

(2010) Omid Azimzadeh et al.   JOURNAL OF PROTEOME RESEARCH

Proteome, Phosphoproteome, and N-Glycoproteome Are Quantitatively Preserved in Formalin-Fixed Paraffin-Embedded Tissue and Analyzable by High-Resolution Mass Spectrometry

(2010) Paweł Ostasiewicz et al.   JOURNAL OF PROTEOME RESEARCH

Differential Proteomic Analysis of Late-Stage and Recurrent Breast Cancer from Formalin-Fixed Paraffin-Embedded Tissues

(2010) Nicholas W. Bateman et al.   JOURNAL OF PROTEOME RESEARCH

Proteomic analysis of formalin-fixed, paraffin-embedded lung neuroendocrine tumor samples from hospital archives

(2010) Alessandro Tanca et al.   Journal of Proteomics

Elevated Pressure Improves the Extraction and Identification of Proteins Recovered from Formalin-Fixed, Paraffin-Embedded Tissue Surrogates

(2010) Carol B. Fowler et al.   PLoS One

Molecular profiling of signalling pathways in formalin-fixed and paraffin-embedded cancer tissues

(2009) Daniela Berg et al.   EUROPEAN JOURNAL OF CANCER

Comparison of different tissue sampling methods for protein extraction from formalin-fixed and paraffin-embedded tissue specimens

(2009) Ilona Gräntzdörffer et al.   EXPERIMENTAL AND MOLECULAR PATHOLOGY

Protein Extraction of Formalin-fixed, Paraffin-embedded Tissue Enables Robust Proteomic Profiles by Mass Spectrometry

(2009) Marshall S. Scicchitano et al.   JOURNAL OF HISTOCHEMISTRY & CYTOCHEMISTRY

Development and validation of a novel protein extraction methodology for quantitation of protein expression in formalin-fixed paraffin-embedded tissues using western blotting

(2009) Niroshini J Nirmalan et al.   JOURNAL OF PATHOLOGY

Evaluation of Archival Time on Shotgun Proteomics of Formalin-Fixed and Paraffin-Embedded Tissues

(2009) Brian M. Balgley et al.   JOURNAL OF PROTEOME RESEARCH

N-Linked Glycoproteomic Analysis of Formalin-Fixed and Paraffin-Embedded Tissues

(2009) Yuan Tian et al.   JOURNAL OF PROTEOME RESEARCH

Equivalence of Protein Inventories Obtained from Formalin-fixed Paraffin-embedded and Frozen Tissue in Multidimensional Liquid Chromatography-Tandem Mass Spectrometry Shotgun Proteomic Analysis

(2009) Robert W. Sprung et al.   MOLECULAR & CELLULAR PROTEOMICS

Generation of high-quality protein extracts from formalin-fixed, paraffin-embedded tissues

(2009) Maria Filippa Addis et al.   PROTEOMICS

Mass spectrometric identification of formaldehyde-induced peptide modifications under in vivo protein cross-linking conditions

(2008) Judy Toews et al.   ANALYTICA CHIMICA ACTA

Antigen Retrieval for Proteomic Characterization of Formalin-Fixed and Paraffin-Embedded Tissues

(2008) Haifeng Xu et al.   JOURNAL OF PROTEOME RESEARCH

Histopathologic variables predict Oncotype DX™ Recurrence Score

(2008) Melina B Flanagan et al.   MODERN PATHOLOGY

Mining the archival formalin-fixed paraffin-embedded tissue proteome: opportunities and challenges

(2008) Niroshini J. Nirmalan et al.   Molecular BioSystems

Protein unlocking procedures of formalin-fixed paraffin-embedded tissues: Application to MALDI-TOF Imaging MS investigations

(2008) Maurizio Ronci et al.   PROTEOMICS

A well-based reverse-phase protein array applicable to extracts from formalin-fixed paraffin-embedded tissue

(2008) Joon-Yong Chung et al.   Proteomics Clinical Applications