Sigpep: Calculating unique peptide signature transition sets in a complete proteome background

jTraML: An Open Source Java API for TraML, the PSI Standard for Sharing SRM Transitions

(2011) Kenny Helsens et al.   JOURNAL OF PROTEOME RESEARCH

A global analysis of peptide fragmentation variability

(2011) Harald Barsnes et al.   PROTEOMICS

Skyline: an open source document editor for creating and analyzing targeted proteomics experiments

(2010) Brendan MacLean et al.   BIOINFORMATICS

Training, Selection, and Robust Calibration of Retention Time Models for Targeted Proteomics

(2010) Luminita Moruz et al.   JOURNAL OF PROTEOME RESEARCH

Generating and navigating proteome maps using mass spectrometry

(2010) Christian H. Ahrens et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Predicting Intensity Ranks of Peptide Fragment Ions

(2009) Ari M. Frank   JOURNAL OF PROTEOME RESEARCH

Expediting the Development of Targeted SRM Assays: Using Data from Shotgun Proteomics to Automate Method Development

(2009) Amol Prakash et al.   JOURNAL OF PROTEOME RESEARCH

Correlation between y-Type Ions Observed in Ion Trap and Triple Quadrupole Mass Spectrometers

(2009) Carly A. Sherwood et al.   JOURNAL OF PROTEOME RESEARCH

MRMaid-DB: A Repository of Published SRM Transitions

(2009) Jennifer A. Cham (Mead) et al.   JOURNAL OF PROTEOME RESEARCH

Unique Ion Signature Mass Spectrometry, a Deterministic Method to Assign Peptide Identity

(2009) Jamie Sherman et al.   MOLECULAR & CELLULAR PROTEOMICS

Multiple Reaction Monitoring-based, Multiplexed, Absolute Quantitation of 45 Proteins in Human Plasma

(2009) Michael A. Kuzyk et al.   MOLECULAR & CELLULAR PROTEOMICS

PeptideAtlas: a resource for target selection for emerging targeted proteomics workflows

(2008) Eric W Deutsch et al.   EMBO REPORTS

Implementation of a data repository-driven approach for targeted proteomics experiments by multiple reaction monitoring

(2008) Geraldine M. Walsh et al.   Journal of Proteomics

MRMaid, the Web-based Tool for Designing Multiple Reaction Monitoring (MRM) Transitions

(2008) Jennifer A. Mead et al.   MOLECULAR & CELLULAR PROTEOMICS

Selected reaction monitoring for quantitative proteomics: a tutorial

(2008) Vinzenz Lange et al.   Molecular Systems Biology

A database of mass spectrometric assays for the yeast proteome

(2008) Paola Picotti et al.   NATURE METHODS

Analysis of the experimental detection of central nervous system-related genes in human brain and cerebrospinal fluid datasets

(2008) Michael Mueller et al.   PROTEOMICS