A global analysis of peptide fragmentation variability

ms_lims, a simple yet powerful open source laboratory information management system for MS-driven proteomics

(2010) Kenny Helsens et al.   PROTEOMICS

Erratum: FragmentationAnalyzer: An open-source tool to analyze MS/MS fragmentation data

(2010) Harald Barsnes et al.   PROTEOMICS

Expediting the Development of Targeted SRM Assays: Using Data from Shotgun Proteomics to Automate Method Development

(2009) Amol Prakash et al.   JOURNAL OF PROTEOME RESEARCH

Correlation between y-Type Ions Observed in Ion Trap and Triple Quadrupole Mass Spectrometers

(2009) Carly A. Sherwood et al.   JOURNAL OF PROTEOME RESEARCH

The Proteomics Identifications database: 2010 update

(2009) Juan Antonio Vizcaíno et al.   NUCLEIC ACIDS RESEARCH

Combining selected reaction monitoring with discovery proteomics in limited biological samples

(2009) Mukesh Kumar Gupta et al.   PROTEOMICS

Observations on the detection of b- and y-type ions in the collisionally activated decomposition spectra of protonated peptides

(2009) King Wai Lau et al.   RAPID COMMUNICATIONS IN MASS SPECTROMETRY

Quantification of the Compositional Information Provided by Immonium Ions on a Quadrupole-Time-of-Flight Mass Spectrometer

(2008) Laura J. Hohmann et al.   ANALYTICAL CHEMISTRY

Modeling peptide fragmentation with dynamic Bayesian networks for peptide identification

(2008) A. A. Klammer et al.   BIOINFORMATICS

PeptideAtlas: a resource for target selection for emerging targeted proteomics workflows

(2008) Eric W Deutsch et al.   EMBO REPORTS

A Simulated MS/MS Library for Spectrum-to-spectrum Searching in Large Scale Identification of Proteins

(2008) Chia-Yu Yen et al.   MOLECULAR & CELLULAR PROTEOMICS

Selected reaction monitoring for quantitative proteomics: a tutorial

(2008) Vinzenz Lange et al.   Molecular Systems Biology

Building consensus spectral libraries for peptide identification in proteomics

(2008) Henry Lam et al.   NATURE METHODS