Tools and challenges for diversity-driven proteomics in Brazil

Terrestrial and aquatic mammals of the Pantanal

(2017) CJR. Alho et al.   BRAZILIAN JOURNAL OF BIOLOGY

Tandem Mass Tag Protein Labeling for Top-Down Identification and Quantification

(2011) Chien-Wen Hung et al.   ANALYTICAL CHEMISTRY

Spectral archives: extending spectral libraries to analyze both identified and unidentified spectra

(2011) Ari M Frank et al.   NATURE METHODS

Can the false-discovery rate be misleading?

(2011) Rodrigo Barboza et al.   PROTEOMICS

Direct Comparison of Stable Isotope Labeling by Amino Acids in Cell Culture and Spectral Counting for Quantitative Proteomics

(2010) Timothy S. Collier et al.   ANALYTICAL CHEMISTRY

XDIA: improving on the label-free data-independent analysis

(2010) Paulo C. Carvalho et al.   BIOINFORMATICS

TagRecon: High-Throughput Mutation Identification through Sequence Tagging

(2010) Surendra Dasari et al.   JOURNAL OF PROTEOME RESEARCH

pNovo:De novoPeptide Sequencing and Identification Using HCD Spectra

(2010) Hao Chi et al.   JOURNAL OF PROTEOME RESEARCH

YADA: a tool for taking the most out of high-resolution spectra

(2009) Paulo C. Carvalho et al.   BIOINFORMATICS

Identifying differences in protein expression levels by spectral counting and feature selection

(2009) P.C. Carvalho et al.   GENETICS AND MOLECULAR RESEARCH

Comparative Proteomic Analysis of Responses to Pathogen Infection and Wounding inFagus sylvatica

(2009) Cristina-Maria Valcu et al.   JOURNAL OF PROTEOME RESEARCH

IDPicker 2.0: Improved Protein Assembly with High Discrimination Peptide Identification Filtering

(2009) Ze-Qiang Ma et al.   JOURNAL OF PROTEOME RESEARCH

Quantitative Proteomics by Metabolic Labeling of Model Organisms

(2009) Joost W. Gouw et al.   MOLECULAR & CELLULAR PROTEOMICS

De novosequencing of peptides by MS/MS

(2009) Joerg Seidler et al.   PROTEOMICS

PatternLab for proteomics: a tool for differential shotgun proteomics

(2008) Paulo C Carvalho et al.   BMC BIOINFORMATICS

Protein identification pipeline for the homology-driven proteomics

(2008) Magno Junqueira et al.   Journal of Proteomics

How Much Peptide Sequence Information Is Contained in Ion Trap Tandem Mass Spectra?

(2008) J COX et al.   JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY

Electron Capture/Transfer versus Collisionally Activated/Induced Dissociations: Solo or Duet?

(2008) Roman A. Zubarev et al.   JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY