Spectral archives: extending spectral libraries to analyze both identified and unidentified spectra

False Discovery Rates of Protein Identifications: A Strike against the Two-Peptide Rule

(2009) Nitin Gupta et al.   JOURNAL OF PROTEOME RESEARCH

Identification of Early Intestinal Neoplasia Protein Biomarkers Using Laser Capture Microdissection and MALDI MS

(2009) Baogang J. Xu et al.   MOLECULAR & CELLULAR PROTEOMICS

De Novo Sequencing of Unique Sequence Tags for Discovery of Post-Translational Modifications of Proteins

(2008) Yufeng Shen et al.   ANALYTICAL CHEMISTRY

Near-optimal hashing algorithms for approximate nearest neighbor in high dimensions

(2008) Alexandr Andoni et al.   COMMUNICATIONS OF THE ACM

Algorithm for Identification of Fusion Proteins via Mass Spectrometry

(2008) Julio Ng et al.   JOURNAL OF PROTEOME RESEARCH

Separating the Wheat from the Chaff: Unbiased Filtering of Background Tandem Mass Spectra Improves Protein Identification

(2008) Magno Junqueira et al.   JOURNAL OF PROTEOME RESEARCH

Improving Sensitivity by Probabilistically Combining Results from Multiple MS/MS Search Methodologies

(2008) Brian C. Searle et al.   JOURNAL OF PROTEOME RESEARCH

Spectral Dictionaries

(2008) Sangtae Kim et al.   MOLECULAR & CELLULAR PROTEOMICS

Clustering Millions of Tandem Mass Spectra

(2007) Ari M. Frank et al.   JOURNAL OF PROTEOME RESEARCH