Second antibody modeling assessment (AMA-II)

High-resolution modeling of antibody structures by a combination of bioinformatics, expert knowledge, and molecular simulations

(2014) Hiroki Shirai et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Structural evidence for a constrained conformation of short CDR-L3 in antibodies

(2014) Alexey Teplyakov et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Crystal structure determination of anti-DNA Fab A52

(2014) Robyn L. Stanfield et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Structure and specificity of an antibody targeting a proteolytically cleaved IgG hinge

(2014) Thomas J. Malia et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Automated antibody structure prediction using Accelrys tools: Results and best practices

(2014) Marc Fasnacht et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Antibody modeling assessment II. Structures and models

(2014) Alexey Teplyakov et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Blind prediction performance of RosettaAntibody 3.0: Grafting, relaxation, kinematic loop modeling, and full CDR optimization

(2014) Brian D. Weitzner et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Assessment of fully automated antibody homology modeling protocols in molecular operating environment

(2014) Johannes K. X. Maier et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

AutomatedAufbauof antibody structures from given sequences using Macromoltek's SmrtMolAntibody

(2014) Monica Berrondo et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Antibody structure determination using a combination of homology modeling, energy-based refinement, and loop prediction

(2014) Kai Zhu et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Computer-aided antibody design

(2012) D. Kuroda et al.   PROTEIN ENGINEERING DESIGN & SELECTION

Antibody modeling assessment

(2011) Juan C. Almagro et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

MolProbity: all-atom structure validation for macromolecular crystallography

(2009) Vincent B. Chen et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

RosettaAntibody: antibody variable region homology modeling server

(2009) A. Sircar et al.   NUCLEIC ACIDS RESEARCH

PIGS: automatic prediction of antibody structures

(2008) P. Marcatili et al.   BIOINFORMATICS

Structural classification of CDR-H3 revisited: A lesson in antibody modeling

(2008) Daisuke Kuroda et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS