Increasing the affinity of selective bZIP-binding peptides through surface residue redesign

Networks of bZIP Protein-Protein Interactions Diversified Over a Billion Years of Evolution

(2013) A. W. Reinke et al.   SCIENCE

Structural Basis of the Unfolded Protein Response

(2012) Alexei Korennykh et al.   Annual Review of Cell and Developmental Biology

Multistate approaches in computational protein design

(2012) James A. Davey et al.   PROTEIN SCIENCE

Designing specific protein-protein interactions using computation, experimental library screening, or integrated methods

(2012) T. Scott Chen et al.   PROTEIN SCIENCE

SYNZIP Protein Interaction Toolbox: in Vitro and in Vivo Specifications of Heterospecific Coiled-Coil Interaction Domains

(2012) Kenneth Evan Thompson et al.   ACS Synthetic Biology

Design of Peptide Inhibitors That Bind the bZIP Domain of Epstein–Barr Virus Protein BZLF1

(2011) T. Scott Chen et al.   JOURNAL OF MOLECULAR BIOLOGY

Determinants of Homodimerization Specificity in Histidine Kinases

(2011) Orr Ashenberg et al.   JOURNAL OF MOLECULAR BIOLOGY

Transcription Factor AP1 Potentiates Chromatin Accessibility and Glucocorticoid Receptor Binding

(2011) Simon C. Biddie et al.   MOLECULAR CELL

Identification of bZIP Interaction Partners of Viral Proteins HBZ, MEQ, BZLF1, and K-bZIP Using Coiled-Coil Arrays

(2010) Aaron W. Reinke et al.   BIOCHEMISTRY

An Atlas of Combinatorial Transcriptional Regulation in Mouse and Man

(2010) Timothy Ravasi et al.   CELL

Role of Hydrophobic and Electrostatic Interactions in Coiled Coil Stability and Specificity

(2009) Jody M. Mason et al.   BIOCHEMISTRY

Design of protein-interaction specificity gives selective bZIP-binding peptides

(2009) Gevorg Grigoryan et al.   NATURE

Tradeoff Between Stability and Multispecificity in the Design of Promiscuous Proteins

(2009) Menachem Fromer et al.   PLoS Computational Biology

Targeting Metastable Coiled-Coil Domains by Computational Design

(2008) Patrick Barth et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Activating transcription factor 4

(2007) Kurosh Ameri et al.   INTERNATIONAL JOURNAL OF BIOCHEMISTRY & CELL BIOLOGY

OPUS-PSP: An Orientation-dependent Statistical All-atom Potential Derived from Side-chain Packing

(2007) Mingyang Lu et al.   JOURNAL OF MOLECULAR BIOLOGY

Distance-scaled, finite ideal-gas reference state improves structure-derived potentials of mean force for structure selection and stability prediction

(2002) Hongyi Zhou et al.   PROTEIN SCIENCE