Improved binding site assignment by high-resolution mapping of RNA–protein interactions using iCLIP
Published 2015 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Improved binding site assignment by high-resolution mapping of RNA–protein interactions using iCLIP
Authors
Keywords
-
Journal
Nature Communications
Volume 6, Issue 1, Pages -
Publisher
Springer Nature
Online
2015-08-11
DOI
10.1038/ncomms8921
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Nuclear matrix protein Matrin3 regulates alternative splicing and forms overlapping regulatory networks with PTB
- (2015) M. B. Coelho et al. EMBO JOURNAL
- HTSeq--a Python framework to work with high-throughput sequencing data
- (2014) S. Anders et al. BIOINFORMATICS
- RNA Bind-n-Seq: Quantitative Assessment of the Sequence and Structural Binding Specificity of RNA Binding Proteins
- (2014) Nicole Lambert et al. MOLECULAR CELL
- Mapping Argonaute and conventional RNA-binding protein interactions with RNA at single-nucleotide resolution using HITS-CLIP and CIMS analysis
- (2014) Michael J Moore et al. Nature Protocols
- Mechanisms for U2AF to define 3′ splice sites and regulate alternative splicing in the human genome
- (2014) Changwei Shao et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- Crosslinking-immunoprecipitation (iCLIP) analysis reveals global regulatory roles of hnRNP L
- (2014) Oliver Rossbach et al. RNA Biology
- Dissecting noncoding and pathogen RNA–protein interactomes
- (2014) Ryan A. Flynn et al. RNA
- HITS-CLIP and Integrative Modeling Define the Rbfox Splicing-Regulatory Network Linked to Brain Development and Autism
- (2014) Sebastien M. Weyn-Vanhentenryck et al. Cell Reports
- De Novo Prediction of PTBP1 Binding and Splicing Targets Reveals Unexpected Features of Its RNA Recognition and Function
- (2014) Areum Han et al. PLoS Computational Biology
- dCLIP: a computational approach for comparative CLIP-seq analyses
- (2014) Tao Wang et al. GENOME BIOLOGY
- PIPE-CLIP: a comprehensive online tool for CLIP-seq data analysis
- (2014) Beibei Chen et al. GENOME BIOLOGY
- Direct Competition between hnRNP C and U2AF65 Protects the Transcriptome from the Exonization of Alu Elements
- (2013) Kathi Zarnack et al. CELL
- iCLIP: Protein–RNA interactions at nucleotide resolution
- (2013) Ina Huppertz et al. METHODS
- TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions
- (2013) Daehwan Kim et al. GENOME BIOLOGY
- STAR: ultrafast universal RNA-seq aligner
- (2012) Alexander Dobin et al. BIOINFORMATICS
- The Cellular EJC Interactome Reveals Higher-Order mRNP Structure and an EJC-SR Protein Nexus
- (2012) Guramrit Singh et al. CELL
- CLIP-seq of eIF4AIII reveals transcriptome-wide mapping of the human exon junction complex
- (2012) Jérôme Saulière et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- Analysis of CLIP and iCLIP methods for nucleotide-resolution studies of protein-RNA interactions
- (2012) Yoichiro Sugimoto et al. GENOME BIOLOGY
- The RNA-binding landscapes of two SR proteins reveal unique functions and binding to diverse RNA classes
- (2012) Minna-Liisa Änkö et al. GENOME BIOLOGY
- Mapping in vivo protein-RNA interactions at single-nucleotide resolution from HITS-CLIP data
- (2011) Chaolin Zhang et al. NATURE BIOTECHNOLOGY
- A quantitative analysis of CLIP methods for identifying binding sites of RNA-binding proteins
- (2011) Shivendra Kishore et al. NATURE METHODS
- Transcriptome-wide Identification of RNA-Binding Protein and MicroRNA Target Sites by PAR-CLIP
- (2010) Markus Hafner et al. CELL
- iCLIP reveals the function of hnRNP particles in splicing at individual nucleotide resolution
- (2010) Julian König et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- iCLIP Predicts the Dual Splicing Effects of TIA-RNA Interactions
- (2010) Zhen Wang et al. PLOS BIOLOGY
- HITS-CLIP: panoramic views of protein-RNA regulation in living cells
- (2010) Robert B. Darnell Wiley Interdisciplinary Reviews-RNA
- Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences
- (2010) Jeremy Goecks et al. GENOME BIOLOGY
- Genome-wide Analysis of PTB-RNA Interactions Reveals a Strategy Used by the General Splicing Repressor to Modulate Exon Inclusion or Skipping
- (2009) Yuanchao Xue et al. MOLECULAR CELL
- HITS-CLIP yields genome-wide insights into brain alternative RNA processing
- (2008) Donny D. Licatalosi et al. NATURE
Find the ideal target journal for your manuscript
Explore over 38,000 international journals covering a vast array of academic fields.
SearchAdd your recorded webinar
Do you already have a recorded webinar? Grow your audience and get more views by easily listing your recording on Peeref.
Upload Now