Analysis of CLIP and iCLIP methods for nucleotide-resolution studies of protein-RNA interactions
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Title
Analysis of CLIP and iCLIP methods for nucleotide-resolution studies of protein-RNA interactions
Authors
Keywords
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Journal
GENOME BIOLOGY
Volume 13, Issue 8, Pages R67
Publisher
Springer Nature
Online
2012-08-07
DOI
10.1186/gb-2012-13-8-r67
References
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Note: Only part of the references are listed.- Mapping in vivo protein-RNA interactions at single-nucleotide resolution from HITS-CLIP data
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- Protein-RNA and Protein-Protein Recognition by Dual KH1/2 Domains of the Neuronal Splicing Factor Nova-1
- (2011) Marianna Teplova et al. STRUCTURE
- Transcriptome-wide Identification of RNA-Binding Protein and MicroRNA Target Sites by PAR-CLIP
- (2010) Markus Hafner et al. CELL
- Activation of paternally expressed genes and perinatal death caused by deletion of the Gtl2 gene
- (2010) Y. Zhou et al. DEVELOPMENT
- iCLIP reveals the function of hnRNP particles in splicing at individual nucleotide resolution
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- Integrative Modeling Defines the Nova Splicing-Regulatory Network and Its Combinatorial Controls
- (2010) C. Zhang et al. SCIENCE
- iCLIP Predicts the Dual Splicing Effects of TIA-RNA Interactions
- (2010) Zhen Wang et al. PLOS BIOLOGY
- Maternally Expressed Gene 3 (MEG3) Noncoding Ribonucleic Acid: Isoform Structure, Expression, and Functions
- (2009) Xun Zhang et al. ENDOCRINOLOGY
- The nucleolar RNA methyltransferase Misu (NSun2) is required for mitotic spindle stability
- (2009) Shobbir Hussain et al. JOURNAL OF CELL BIOLOGY
- An RNA code for the FOX2 splicing regulator revealed by mapping RNA-protein interactions in stem cells
- (2009) Gene W Yeo et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- 5-methylcytosine in RNA: detection, enzymatic formation and biological functions
- (2009) Yuri Motorin et al. NUCLEIC ACIDS RESEARCH
- Identification of protein binding sites on U3 snoRNA and pre-rRNA by UV cross-linking and high-throughput analysis of cDNAs
- (2009) S. Granneman et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
- (2009) Ben Langmead et al. GENOME BIOLOGY
- FindPeaks 3.1: a tool for identifying areas of enrichment from massively parallel short-read sequencing technology
- (2008) A. P. Fejes et al. BIOINFORMATICS
- A systematic analysis of intronic sequences downstream of 5' splice sites reveals a widespread role for U-rich motifs and TIA1/TIAL1 proteins in alternative splicing regulation
- (2008) I. Aznarez et al. GENOME RESEARCH
- HITS-CLIP yields genome-wide insights into brain alternative RNA processing
- (2008) Donny D. Licatalosi et al. NATURE
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