Balancing selection and introgression of newt immune-response genes

Divergent Allele Advantage at Human MHC Genes: Signatures of Past and Ongoing Selection

(2018) Federica Pierini et al.   MOLECULAR BIOLOGY AND EVOLUTION

Immunogenetic novelty confers a selective advantage in host–pathogen coevolution

(2018) Karl P. Phillips et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Isolation and gene flow in a speciation continuum in newts

(2017) Maciej Pabijan et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Linkage Map of Lissotriton Newts Provides Insight into the Genetic Basis of Reproductive Isolation

(2017) Marta Niedzicka et al.   G3-Genes Genomes Genetics

Risk and efficacy of human-enabled interspecific hybridization for climate-change adaptation: response to Hamilton and Miller (2016)

(2016) Ryan P. Kovach et al.   CONSERVATION BIOLOGY

Archaic Hominin Admixture Facilitated Adaptation to Out-of-Africa Environments

(2016) Rachel M. Gittelman et al.   CURRENT BIOLOGY

Selective Landscapes in newt Immune Genes Inferred from Patterns of Nucleotide Variation

(2016) Anna Fijarczyk et al.   Genome Biology and Evolution

SLiM 2: Flexible, Interactive Forward Genetic Simulations

(2016) Benjamin C. Haller et al.   MOLECULAR BIOLOGY AND EVOLUTION

Divergence history of the Carpathian and smooth newts modelled in space and time

(2016) P. Zieliński et al.   MOLECULAR ECOLOGY

Testing genotyping strategies for ultra-deep sequencing of a co-amplifying gene family: MHC class I in a passerine bird

(2016) Aleksandra Biedrzycka et al.   Molecular Ecology Resources

Determinants of genetic diversity

(2016) Hans Ellegren et al.   NATURE REVIEWS GENETICS

Evolution of heterogeneous genome differentiation across multiple contact zones in a crow species complex

(2016) Nagarjun Vijay et al.   Nature Communications

Molecular Inversion Probes for targeted resequencing in non-model organisms

(2016) M. Niedzicka et al.   Scientific Reports

Adaptive introgression as a resource for management and genetic conservation in a changing climate

(2015) Jill A. Hamilton et al.   CONSERVATION BIOLOGY

Linked selection and recombination rate variation drive the evolution of the genomic landscape of differentiation across the speciation continuum ofFicedulaflycatchers

(2015) Reto Burri et al.   GENOME RESEARCH

Detecting balancing selection in genomes: limits and prospects

(2015) Anna Fijarczyk et al.   MOLECULAR ECOLOGY

amplisas: a web server for multilocus genotyping using next-generation amplicon sequencing data

(2015) Alvaro Sebastian et al.   Molecular Ecology Resources

Genetic rescue to the rescue

(2015) Andrew R. Whiteley et al.   TRENDS IN ECOLOGY & EVOLUTION

Divergent sorting of a balanced ancestral polymorphism underlies the establishment of gene-flow barriers in Capsella

(2015) Adrien Sicard et al.   Nature Communications

Red Queen Processes Drive Positive Selection on Major Histocompatibility Complex (MHC) Genes

(2015) Maciej Jan Ejsmond et al.   PLoS Computational Biology

Evidence for a Common Origin of Blacksmiths and Cultivators in the Ethiopian Ari within the Last 4500 Years: Lessons for Clustering-Based Inference

(2015) Lucy van Dorp et al.   PLoS Genetics

Hybridization in Parasites: Consequences for Adaptive Evolution, Pathogenesis, and Public Health in a Changing World

(2015) Kayla C. King et al.   PLoS Pathogens

Species-wide Genetic Incompatibility Analysis Identifies Immune Genes as Hot Spots of Deleterious Epistasis

(2014) Eunyoung Chae et al.   CELL

The dissection of a Pleistocene refugium: phylogeography of the smooth newt,Lissotriton vulgaris, in the Balkans

(2014) Maciej Pabijan et al.   JOURNAL OF BIOGEOGRAPHY

Selective pressures on MHC class II genes in the guppy (Poecilia reticulata) as inferred by hierarchical analysis of population structure

(2014) M. Herdegen et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Reanalysis suggests that genomic islands of speciation are due to reduced diversity, not reduced gene flow

(2014) Tami E. Cruickshank et al.   MOLECULAR ECOLOGY

Single Nucleotide Polymorphisms Reveal Genetic Structuring of the Carpathian Newt and Provide Evidence of Interspecific Gene Flow in the Nuclear Genome

(2014) Piotr Zieliński et al.   PLoS One

Interspecific introgressive origin of genomic diversity in the house mouse

(2014) Kevin J. Liu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Introgression from Domestic Goat Generated Variation at the Major Histocompatibility Complex of Alpine Ibex

(2014) Christine Grossen et al.   PLoS Genetics

Assisted Gene Flow to Facilitate Local Adaptation to Climate Change

(2013) Sally N. Aitken et al.   Annual Review of Ecology Evolution and Systematics

Hybridization and speciation

(2013) R. Abbott et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Adaptive introgression in animals: examples and comparison to new mutation and standing variation as sources of adaptive variation

(2013) Philip W. Hedrick   MOLECULAR ECOLOGY

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

What is the evidence for heterozygote advantage selection?

(2012) Philip W. Hedrick   TRENDS IN ECOLOGY & EVOLUTION

Interspecific hybridization increases MHC class II diversity in two sister species of newts

(2011) KRYSTYNA NADACHOWSKA-BRZYSKA et al.   MOLECULAR ECOLOGY

A framework for variation discovery and genotyping using next-generation DNA sequencing data

(2011) Mark A DePristo et al.   NATURE GENETICS

The Shaping of Modern Human Immune Systems by Multiregional Admixture with Archaic Humans

(2011) L. Abi-Rached et al.   SCIENCE

Repeated Adaptive Introgression at a Gene under Multiallelic Balancing Selection

(2011) Vincent Castric et al.   PLoS Genetics

Effect of balancing selection on spatial genetic structure within populations: theoretical investigations on the self-incompatibility locus and empirical studies in Arabidopsis halleri

(2010) J-B Leducq et al.   HEREDITY

Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows

(2010) LAURENT EXCOFFIER et al.   Molecular Ecology Resources

How pathogens drive genetic diversity: MHC, mechanisms and misunderstandings

(2010) L. G. Spurgin et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Does reduced MHC diversity decrease viability of vertebrate populations?

(2009) Jacek Radwan et al.   BIOLOGICAL CONSERVATION

MHC diversity in bottlenecked populations: a simulation model

(2009) Maciej Jan Ejsmond et al.   CONSERVATION GENETICS