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Title
Training-free atomistic prediction of nucleosome occupancy
Authors
Keywords
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Journal
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
Volume 111, Issue 17, Pages 6293-6298
Publisher
Proceedings of the National Academy of Sciences
Online
2014-04-15
DOI
10.1073/pnas.1404475111
References
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Related references
Note: Only part of the references are listed.- DNA Architecture, Deformability, and Nucleosome Positioning
- (2014) Fei Xu et al. JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS
- Structure-based Analysis of DNA Sequence Patterns Guiding Nucleosome Positioningin vitro
- (2014) Feng Cui et al. JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS
- A map of nucleosome positions in yeast at base-pair resolution
- (2012) Kristin Brogaard et al. NATURE
- Sequence-based prediction of single nucleosome positioning and genome-wide nucleosome occupancy
- (2012) T. van der Heijden et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Chromatin higher-order structures and gene regulation
- (2011) Guohong Li et al. CURRENT OPINION IN GENETICS & DEVELOPMENT
- Nucleosomes protect DNA from DNA methylation in vivo and in vitro
- (2011) Max Felle et al. NUCLEIC ACIDS RESEARCH
- Cytosine methylation alters DNA mechanical properties
- (2011) Philip M. D. Severin et al. NUCLEIC ACIDS RESEARCH
- DNA methylation-associated silencing of tumor-suppressor microRNAs in cancer
- (2011) P Lopez-Serra et al. ONCOGENE
- Conformational Optimization with Natural Degrees of Freedom: A Novel Stochastic Chain Closure Algorithm
- (2010) Peter Minary et al. JOURNAL OF COMPUTATIONAL BIOLOGY
- Relationship between nucleosome positioning and DNA methylation
- (2010) Ramakrishna K. Chodavarapu et al. NATURE
- Prediction of Nucleosome Positioning Based on Transcription Factor Binding Sites
- (2010) Xianfu Yi et al. PLoS One
- G+C content dominates intrinsic nucleosome occupancy
- (2009) Desiree Tillo et al. BMC BIOINFORMATICS
- Linking DNA methylation and histone modification: patterns and paradigms
- (2009) Howard Cedar et al. NATURE REVIEWS GENETICS
- Protein–DNA binding specificity: a grid-enabled computational approach applied to single and multiple protein assemblies
- (2009) Krystyna Zakrzewska et al. PHYSICAL CHEMISTRY CHEMICAL PHYSICS
- Protein–DNA recognition: Breaking the combinatorial barrier
- (2008) Cyril Deremble et al. COMPUTER PHYSICS COMMUNICATIONS
- The DNA-encoded nucleosome organization of a eukaryotic genome
- (2008) Noam Kaplan et al. NATURE
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