Genome duplication and mutations in ACE2 cause multicellular, fast-sedimenting phenotypes in evolved Saccharomyces cerevisiae

TEMPO AND MODE OF MULTICELLULAR ADAPTATION IN EXPERIMENTALLY EVOLVEDSACCHAROMYCES CEREVISIAE

(2013) William C. Ratcliff et al.   EVOLUTION

Evolution of pleiotropic costs in experimental populations

(2013) J.-N. Jasmin et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

The new modern era of yeast genomics: community sequencing and the resulting annotation of multiple Saccharomyces cerevisiae strains at the Saccharomyces Genome Database

(2013) Stacia R. Engel et al.   Database-The Journal of Biological Databases and Curation

Whole chromosome aneuploidy: Big mutations drive adaptation by phenotypic leap

(2012) Guangbo Chen et al.   BIOESSAYS

De novo detection of copy number variation by co-assembly

(2012) Jurgen F. Nijkamp et al.   BIOINFORMATICS

Evolutionary engineering strategies to enhance tolerance of xylose utilizing recombinant yeast to inhibitors derived from spruce biomass

(2012) Rakesh Koppram et al.   Biotechnology for Biofuels

The RAM Network in Pathogenic Fungi

(2012) Sarah Saputo et al.   EUKARYOTIC CELL

LIFE-HISTORY EVOLUTION AND DENSITY-DEPENDENT GROWTH IN EXPERIMENTAL POPULATIONS OF YEAST

(2012) Jean-Nicolas Jasmin et al.   EVOLUTION

Laboratory evolution of new lactate transporter genes in a jen1Δ mutant of Saccharomyces cerevisiae and their identification as ADY2 alleles by whole-genome resequencing and transcriptome analysis

(2012) Stefan Kok et al.   FEMS YEAST RESEARCH

Laboratory evolution of copper tolerant yeast strains

(2012) Giusy Adamo et al.   Microbial Cell Factories

De novo sequencing, assembly and analysis of the genome of the laboratory strain Saccharomyces cerevisiae CEN.PK113-7D, a model for modern industrial biotechnology

(2012) Jurgen F Nijkamp et al.   Microbial Cell Factories

Experimental evolution of multicellularity

(2012) W. C. Ratcliff et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Chromosomal duplication is a transient evolutionary solution to stress

(2012) A. H. Yona et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Mutation Hot Spots in Yeast Caused by Long-Range Clustering of Homopolymeric Sequences

(2012) Xin Ma et al.   Cell Reports

The Multiple Origins of Complex Multicellularity

(2011) Andrew H. Knoll   Annual Review of Earth and Planetary Sciences

Mutator dynamics in sexual and asexual experimental populations of yeast

(2011) Yevgeniy Raynes et al.   BMC EVOLUTIONARY BIOLOGY

Adaptive laboratory evolution—harnessing the power of biology for metabolic engineering

(2011) Vasiliy A Portnoy et al.   CURRENT OPINION IN BIOTECHNOLOGY

Genome-wide analytical approaches for reverse metabolic engineering of industrially relevant phenotypes in yeast

(2011) Bart Oud et al.   FEMS YEAST RESEARCH

Systems biology of lactic acid bacteria: a critical review

(2011) Bas Teusink et al.   Microbial Cell Factories

Microbial laboratory evolution in the era of genome-scale science

(2011) T. M. Conrad et al.   Molecular Systems Biology

Unravelling evolutionary strategies of yeast for improving galactose utilization through integrated systems level analysis

(2011) K.-K. Hong et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Sucrose Utilization in Budding Yeast as a Model for the Origin of Undifferentiated Multicellularity

(2011) John H. Koschwanez et al.   PLOS BIOLOGY

Reciprocal Sign Epistasis between Frequently Experimentally Evolved Adaptive Mutations Causes a Rugged Fitness Landscape

(2011) Daniel J. Kvitek et al.   PLoS Genetics

Anaplerotic Role for Cytosolic Malic Enzyme in EngineeredSaccharomyces cerevisiaeStrains

(2010) Rintze M. Zelle et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

Flocculation in Saccharomyces cerevisiae: a review

(2010) E.V. Soares   JOURNAL OF APPLIED MICROBIOLOGY

Adaptation of experimental yeast populations to stressful conditions in relation to population size

(2010) P. SAMANI et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Elimination of Glycerol Production in Anaerobic Cultures of a Saccharomyces cerevisiae Strain Engineered To Use Acetic Acid as an Electron Acceptor

(2009) V. G. Medina et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Identification and dynamics of a beneficial mutation in a long-term evolution experiment with Escherichia coli

(2009) Mark T Stanek et al.   BMC EVOLUTIONARY BIOLOGY

An atypicalPMR2  locus is responsible for hypersensitivity to sodium and lithium cations in the laboratory strainSaccharomyces cerevisiae CEN.PK113-7D

(2009) Pascale Daran-Lapujade et al.   FEMS YEAST RESEARCH

Optimization of DNA polymerase mutation rates during bacterial evolution

(2009) E. Loh et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Origins of Multicellularity and the Early History of the Genetic Toolkit For Animal Development

(2008) Antonis Rokas   Annual Review of Genetics

Novel Evolutionary Engineering Approach for Accelerated Utilization of Glucose, Xylose, and Arabinose Mixtures by Engineered Saccharomyces cerevisiae Strains

(2008) H. W. Wisselink et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Regulation of the Yeast Ace2 Transcription Factor during the Cell Cycle

(2008) Mohammed Sbia et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Molecular characterization of clonal interference during adaptive evolution in asexual populations of Saccharomyces cerevisiae

(2008) Katy C Kao et al.   NATURE GENETICS

Neutralism and selectionism: a network-based reconciliation

(2008) Andreas Wagner   NATURE REVIEWS GENETICS

Multicellularity of a unicellular organism in response to DNA replication stress

(2008) Tao Weitao   RESEARCH IN MICROBIOLOGY