Systems biology of lactic acid bacteria: a critical review

Multi-omics approach to study the growth efficiency and amino acid metabolism in Lactococcus lactis at various specific growth rates

(2011) Petri-Jaan Lahtvee et al.   Microbial Cell Factories

Systems biology from micro-organisms to human metabolic diseases: the role of detailed kinetic models

(2010) Barbara M. Bakker et al.   BIOCHEMICAL SOCIETY TRANSACTIONS

Fed-batch culture of Escherichia coli for L-valine production based on in silico flux response analysis

(2010) Jin Hwan Park et al.   BIOTECHNOLOGY AND BIOENGINEERING

Genome-scale metabolic modeling of a clostridial co-culture for consolidated bioprocessing

(2010) Fahimeh Salimi et al.   Biotechnology Journal

Cooperation and cheating in microbial exoenzyme production - Theoretical analysis for biotechnological applications

(2010) Stefan Schuster et al.   Biotechnology Journal

BiGG: a Biochemical Genetic and Genomic knowledgebase of large scale metabolic reconstructions

(2010) Jan Schellenberger et al.   BMC BIOINFORMATICS

OptFlux: an open-source software platform for in silico metabolic engineering

(2010) Isabel Rocha et al.   BMC Systems Biology

OptORF: Optimal metabolic and regulatory perturbations for metabolic engineering of microbial strains

(2010) Joonhoon Kim et al.   BMC Systems Biology

The biomass objective function

(2010) Adam M Feist et al.   CURRENT OPINION IN MICROBIOLOGY

Enzyme kinetics informatics: from instrument to browser

(2010) Neil Swainston et al.   FEBS Journal

Inhibition kinetics of catabolic dehydrogenases by elevated moieties of ATP and ADP - implication for a new regulation mechanism in Lactococcus lactis

(2010) Rong Cao et al.   FEBS Journal

Competitive interactions in Escherichia coli populations: the role of bacteriocins

(2010) Hadeel Majeed et al.   ISME Journal

Genome-scale dynamic modeling of the competition between Rhodoferax and Geobacter in anoxic subsurface environments

(2010) Kai Zhuang et al.   ISME Journal

Efficient production of polylactic acid and its copolymers by metabolically engineered Escherichia coli

(2010) Yu Kyung Jung et al.   JOURNAL OF BIOTECHNOLOGY

Phosphoglycerate Mutase Is a Highly Efficient Enzyme without Flux Control in Lactococcus lactis

(2010) Christian Solem et al.   JOURNAL OF MOLECULAR MICROBIOLOGY AND BIOTECHNOLOGY

Rapid dissection of a complex phenotype through genomic-scale mapping of fitness altering genes

(2010) T.E. Warnecke et al.   METABOLIC ENGINEERING

What is flux balance analysis?

(2010) Jeffrey D Orth et al.   NATURE BIOTECHNOLOGY

Subcellular metabolic organization in the context of dynamic energy budget and biochemical systems theories

(2010) S. Vinga et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Genome-Scale Model of Streptococcus thermophilus LMG18311 for Metabolic Comparison of Lactic Acid Bacteria

(2009) M. I. Pastink et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Examination of post-transcriptional regulations in prokaryotes by integrative biology

(2009) Flora Picard et al.   COMPTES RENDUS BIOLOGIES

Gene Expression Profiling and the Use of Genome-Scale In Silico Models of Escherichia coli for Analysis: Providing Context for Content

(2009) N. E. Lewis et al.   JOURNAL OF BACTERIOLOGY

The MG1363 and IL1403 Laboratory Strains of Lactococcus lactis and Several Dairy Strains Are Diploid

(2009) O. Michelsen et al.   JOURNAL OF BACTERIOLOGY

A dynamic, genome-scale flux model of Lactococcus lactis to increase specific recombinant protein expression

(2009) Gian M. Oddone et al.   METABOLIC ENGINEERING

Model-driven evaluation of the production potential for growth-coupled products of Escherichia coli

(2009) Adam M. Feist et al.   METABOLIC ENGINEERING

Snowdrift game dynamics and facultative cheating in yeast

(2009) Jeff Gore et al.   NATURE

Explaining microbial population genomics through phage predation

(2009) Francisco Rodriguez-Valera et al.   NATURE REVIEWS MICROBIOLOGY

Transcriptome and Proteome Exploration to Model Translation Efficiency and Protein Stability in Lactococcus lactis

(2009) Clémentine Dressaire et al.   PLoS Computational Biology

Understanding the Adaptive Growth Strategy of Lactobacillus plantarum by In Silico Optimisation

(2009) Bas Teusink et al.   PLoS Computational Biology

Asymmetric relationships between proteins shape genome evolution

(2009) Richard A Notebaart et al.   GENOME BIOLOGY

Bistability, Epigenetics, and Bet-Hedging in Bacteria

(2008) Jan-Willem Veening et al.   Annual Review of Microbiology

Improvement of Lactobacillus plantarum Aerobic Growth as Directed by Comprehensive Transcriptome Analysis

(2008) M. J. A. Stevens et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

High-Level Folate Production in Fermented Foods by the B12 Producer Lactobacillus reuteri JCM1112

(2008) F. Santos et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

The metabolic pH response in Lactococcus lactis: An integrative experimental and modelling approach

(2008) Ann Zahle Andersen et al.   COMPUTATIONAL BIOLOGY AND CHEMISTRY

A critical view of metabolic network adaptations

(2008) Balázs Papp et al.   HFSP Journal

Co-factor engineering in lactobacilli: Effects of uncoupled ATPase activity on metabolic fluxes in Lactobacillus (L.) plantarum and L. sakei

(2008) Ida Rud et al.   METABOLIC ENGINEERING

Co-Regulation of Metabolic Genes Is Better Explained by Flux Coupling Than by Network Distance

(2008) Richard A. Notebaart et al.   PLoS Computational Biology